subroutine setuppm10(lunin,mype,nreal,nobs,isis,is,conv_diagsave)
!$$$ subprogram documentation block
! . . .
! subprogram: setuppm10 --- Compute rhs of oi for in-situ pm10 obs
!
! prgrmmr: parrish org: np22 date: 1990-10-06
!
! abstract: For pm10 observations, this routine
! a) reads obs assigned to given mpi task (geographic region),
! b) simulates obs from guess,
! c) apply some quality control to obs,
! d) load weight and innovation arrays used in minimization
! e) collects statistics for runtime diagnostic output
! f) writes additional diagnostic information to output file
!
! program history log:
! 2016-02-20 pagowski - based on setupmp2_5; converted for pm10
! 2016-04-04 guo - full res obvsr: index to allow redistribution of obsdiags
! 2016-05-18 guo - replaced ob_type with polymorphic obsNode through type casting
! 2016-06-24 guo - fixed the default value of obsdiags(:,:)%tail%luse to luse(i)
! . removed (%dlat,%dlon) debris.
! 2017-02-06 todling - add netcdf_diag capability; hidden as contained code
!
! input argument list:
! lunin - unit from which to read observations
! mype - mpi task id
! nreal - number of pieces of info (location, time, etc) per obs
! nobs - number of observations
! isis - sensor/instrument/satellite id
! is - integer(i_kind) counter for number of obs types to process
!
! obstype - type of pm10 obs
!
! attributes:
! language: f90
! machine: ibm RS/6000 SP; SGI Origin 2000; Compaq HP
!
!$$$ end documentation block
! !uses:
use mpeu_util, only: die,perr
use kinds, only: r_kind,i_kind,r_single
use constants, only : zero,half,one,two,tiny_r_kind
use constants, only : cg_term,wgtlim
use constants, only: huge_single,r10
use constants, only: r1000,rd,max_varname_length
use m_obsdiags, only : pm10head
use m_obsNode , only : obsNode
use m_pm10Node, only : pm10Node
use m_obsLList, only : obsLList_appendNode
use obsmod , only : i_pm10_ob_type,time_offset
use obsmod, only : obsdiags,lobsdiag_allocated,lobsdiagsave
use obsmod, only : obs_diag,luse_obsdiag
use obsmod, only: netcdf_diag, binary_diag, dirname, ianldate
use nc_diag_write_mod, only: nc_diag_init, nc_diag_header, nc_diag_metadata, &
nc_diag_write, nc_diag_data2d
use nc_diag_read_mod, only: nc_diag_read_init, nc_diag_read_get_dim, nc_diag_read_close
use qcmod, only : dfact,dfact1
use gsi_4dvar, only: nobs_bins,hr_obsbin
use gridmod, only : get_ij,get_ijk
use guess_grids, only : nfldsig,hrdifsig
use gsi_bundlemod, only : gsi_bundlegetpointer,GSI_BundlePrint
use gsi_chemguess_mod, only : gsi_chemguess_get,gsi_chemguess_bundle
use gsi_metguess_mod, only : gsi_metguess_get,gsi_metguess_bundle
use convinfo, only: cgross,cvar_b,cvar_pg,&
icuse,ictype,icsubtype
use jfunc, only : jiter,last,miter
use m_dtime, only: dtime_setup, dtime_check
use chemmod, only : &
iconc,ierror,ilat,ilon,itime,iid,ielev,isite,iikx,&
elev_tolerance,elev_missing,pm10_teom_max,ilate,ilone
use chemmod, only : oneobtest_chem
use chemmod, only : d_10,nh4_mfac,oc_mfac
use chemmod, only: naero_gocart_wrf,aeronames_gocart_wrf,&
upper2lower,lower2upper,laeroana_gocart
use gridmod, only : cmaq_regional,wrf_mass_regional
implicit none
! !input parameters:
character(len=3) :: cvar='pm1'
integer(i_kind) , intent(in ) :: lunin ! unit from which to read observations
integer(i_kind) , intent(in ) :: mype ! mpi task id
integer(i_kind) , intent(in ) :: nreal ! number of pieces of non-co info (location, time, etc) per obs
integer(i_kind) , intent(inout) :: nobs ! number of observations
character(20) , intent(in ) :: isis ! sensor/instrument/satellite id
integer(i_kind) , intent(in ) :: is
logical , intent(in ) :: conv_diagsave ! logical to save innovation dignostics
! a function of level
!-------------------------------------------------------------------------
! declare local parameters
character(len=*),parameter:: myname="setuppm10"
! declare local variables
real(r_kind) rat_err2,dlat,dtime,dlon
real(r_kind) cg_pm10,wgross,wnotgross,wgt,arg,exp_arg,term
real(r_kind) :: pm10ges
real(r_kind) :: ratio_errors,error
real(r_kind) :: innov,innov_error2,rwgt,valqc,tfact,innov_error,elevges,&
elevdiff,conc,elevobs,ps_ges,site_id,tv_ges
real(r_kind) errinv_input,errinv_adjst,errinv_final
real(r_kind) err_input,err_adjst,err_final
real(r_kind) ,dimension(nreal,nobs):: data
real(r_kind),pointer,dimension(:,:,:):: rank3
INTEGER(i_kind) i,k,ier,ibin,l,istat,ikx,ii,jj,idia,ifld
integer(i_kind) mm1
integer(i_kind) :: nchar,nrealdiag
character(len=8) :: station_id
character(len=8),allocatable,dimension(:) :: cdiagbuf
real(r_single),allocatable,dimension(:,:) :: rdiagbuf
real(r_kind),dimension(4):: tempwij
logical,dimension(nobs):: luse,muse
integer(i_kind),dimension(nobs):: ioid ! initial (pre-distribution) obs ID
integer(i_kind),dimension(nobs) :: dup
logical:: in_curbin, in_anybin
logical proceed
integer(i_kind),dimension(nobs_bins) :: n_alloc
integer(i_kind),dimension(nobs_bins) :: m_alloc
class(obsNode), pointer:: my_node
type(pm10Node), pointer:: my_head
type(obs_diag), pointer:: my_diag
real(r_kind),allocatable,dimension(:,:,: ) :: ges_ps
real(r_kind),allocatable,dimension(:,:,: ) :: ges_z
real(r_kind),allocatable,dimension(:,:,:,:) :: ges_pm10
real(r_kind),allocatable,dimension(:,:,:,:) :: ges_tv
character(len=max_varname_length) :: aeroname
integer(i_kind) :: ipm10,n_gocart_var
! Check to see if required guess fields are available
call check_vars_(proceed)
if(.not.proceed) return ! not all vars available, simply return
! If require guess vars available, extract from bundle ...
call init_vars_
n_alloc(:)=0
m_alloc(:)=0
nchar=1
nrealdiag=19
mm1=mype+1
!
!*********************************************************************************
! get pointer to pm10 guess state, if not present return
if (cmaq_regional) then
WRITE(6,*) 'pm10 for cmaq not implemented. Stopping'
CALL stop2(451)
endif
if (wrf_mass_regional .and. laeroana_gocart) then
!check if aerosol species in control
call gsi_chemguess_get ( 'aerosols::3d', n_gocart_var, ier )
if (n_gocart_var /= naero_gocart_wrf) then
write(6,*) 'setuppm10: not all gocart aerosols in anavinfo'
call stop2(451)
endif
do i=1,naero_gocart_wrf
aeroname=upper2lower(aeronames_gocart_wrf(i))
call gsi_chemguess_get ('var::'//trim(aeroname), ipm10, ier )
if (ier > 0 .or. ipm10 <= 0) then
write(6,*) 'convinfo: ',trim(aeroname),' missing in anavinfo'
call stop2(452)
endif
enddo
if (size(gsi_chemguess_bundle)==nfldsig) then
aeroname='bc1'
call gsi_bundlegetpointer(gsi_chemguess_bundle(1),trim(aeroname),&
rank3,ier)
if (ier==0) then
allocate(ges_pm10(size(rank3,1),size(rank3,2),size(rank3,3),&
nfldsig))
ges_pm10(:,:,:,1)=rank3
do ifld=2,nfldsig
call gsi_bundlegetpointer(gsi_chemguess_bundle(ifld),trim(aeroname),rank3,ier)
ges_pm10(:,:,:,ifld)=rank3
enddo
else
write(6,*) 'setuppm10: ',trim(aeroname),' not found in chem bundle, ier= ',ier
call stop2(453)
endif
aeroname='bc2'
call gsi_bundlegetpointer(gsi_chemguess_bundle(1),trim(aeroname),&
rank3,ier)
if (ier==0) then
ges_pm10(:,:,:,1)=ges_pm10(:,:,:,1)+rank3
do ifld=2,nfldsig
call gsi_bundlegetpointer(gsi_chemguess_bundle(ifld),trim(aeroname),rank3,ier)
ges_pm10(:,:,:,ifld)=ges_pm10(:,:,:,ifld)+rank3
enddo
else
write(6,*) 'setuppm10: ',trim(aeroname),' not found in chem bundle, ier= ',ier
call stop2(453)
endif
aeroname='sulf'
call gsi_bundlegetpointer(gsi_chemguess_bundle(1),trim(aeroname),&
rank3,ier)
if (ier==0) then
ges_pm10(:,:,:,1)=ges_pm10(:,:,:,1)+rank3*nh4_mfac
do ifld=2,nfldsig
call gsi_bundlegetpointer(gsi_chemguess_bundle(ifld),trim(aeroname),rank3,ier)
ges_pm10(:,:,:,ifld)=ges_pm10(:,:,:,ifld)+rank3*nh4_mfac
enddo
else
write(6,*) 'setuppm10: ',trim(aeroname),' not found in chem bundle, ier= ',ier
call stop2(453)
endif
aeroname='p25'
call gsi_bundlegetpointer(gsi_chemguess_bundle(1),trim(aeroname),&
rank3,ier)
if (ier==0) then
ges_pm10(:,:,:,1)=ges_pm10(:,:,:,1)+rank3
do ifld=2,nfldsig
call gsi_bundlegetpointer(gsi_chemguess_bundle(ifld),trim(aeroname),rank3,ier)
ges_pm10(:,:,:,ifld)=ges_pm10(:,:,:,ifld)+rank3
enddo
else
write(6,*) 'setuppm10: ',trim(aeroname),' not found in chem bundle, ier= ',ier
call stop2(453)
endif
aeroname='oc1'
call gsi_bundlegetpointer(gsi_chemguess_bundle(1),trim(aeroname),&
rank3,ier)
if (ier==0) then
ges_pm10(:,:,:,1)=ges_pm10(:,:,:,1)+rank3*oc_mfac
do ifld=2,nfldsig
call gsi_bundlegetpointer(gsi_chemguess_bundle(ifld),trim(aeroname),rank3,ier)
ges_pm10(:,:,:,ifld)=ges_pm10(:,:,:,ifld)+rank3*oc_mfac
enddo
else
write(6,*) 'setuppm10: ',trim(aeroname),' not found in chem bundle, ier= ',ier
call stop2(453)
endif
aeroname='oc2'
call gsi_bundlegetpointer(gsi_chemguess_bundle(1),trim(aeroname),&
rank3,ier)
if (ier==0) then
ges_pm10(:,:,:,1)=ges_pm10(:,:,:,1)+rank3*oc_mfac
do ifld=2,nfldsig
call gsi_bundlegetpointer(gsi_chemguess_bundle(ifld),trim(aeroname),rank3,ier)
ges_pm10(:,:,:,ifld)=ges_pm10(:,:,:,ifld)+rank3*oc_mfac
enddo
else
write(6,*) 'setuppm10: ',trim(aeroname),' not found in chem bundle, ier= ',ier
call stop2(453)
endif
aeroname='seas1'
call gsi_bundlegetpointer(gsi_chemguess_bundle(1),trim(aeroname),&
rank3,ier)
if (ier==0) then
ges_pm10(:,:,:,1)=ges_pm10(:,:,:,1)+rank3
do ifld=2,nfldsig
call gsi_bundlegetpointer(gsi_chemguess_bundle(ifld),trim(aeroname),rank3,ier)
ges_pm10(:,:,:,ifld)=ges_pm10(:,:,:,ifld)+rank3
enddo
else
write(6,*) 'setuppm10: ',trim(aeroname),' not found in chem bundle, ier= ',ier
call stop2(453)
endif
aeroname='seas2'
call gsi_bundlegetpointer(gsi_chemguess_bundle(1),trim(aeroname),&
rank3,ier)
if (ier==0) then
ges_pm10(:,:,:,1)=ges_pm10(:,:,:,1)+rank3
do ifld=2,nfldsig
call gsi_bundlegetpointer(gsi_chemguess_bundle(ifld),trim(aeroname),rank3,ier)
ges_pm10(:,:,:,ifld)=ges_pm10(:,:,:,ifld)+rank3
enddo
else
write(6,*) 'setuppm10: ',trim(aeroname),' not found in chem bundle, ier= ',ier
call stop2(453)
endif
aeroname='seas3'
call gsi_bundlegetpointer(gsi_chemguess_bundle(1),TRIM(aeroname),&
rank3,ier)
if (ier==0) then
ges_pm10(:,:,:,1)=ges_pm10(:,:,:,1)+rank3
do ifld=2,nfldsig
call gsi_bundlegetpointer(gsi_chemguess_bundle(ifld),TRIM(aeroname),rank3,ier)
ges_pm10(:,:,:,ifld)=ges_pm10(:,:,:,ifld)+rank3
enddo
else
write(6,*) 'setuppm10: ',TRIM(aeroname),' not found in chem bundle, ier= ',ier
call stop2(453)
endif
aeroname='dust1'
call gsi_bundlegetpointer(gsi_chemguess_bundle(1),trim(aeroname),&
rank3,ier)
if (ier==0) then
ges_pm10(:,:,:,1)=ges_pm10(:,:,:,1)+rank3
do ifld=2,nfldsig
call gsi_bundlegetpointer(gsi_chemguess_bundle(ifld),trim(aeroname),rank3,ier)
ges_pm10(:,:,:,ifld)=ges_pm10(:,:,:,ifld)+rank3
enddo
else
write(6,*) 'setuppm10: ',trim(aeroname),' not found in chem bundle, ier= ',ier
call stop2(453)
endif
aeroname='dust2'
call gsi_bundlegetpointer(gsi_chemguess_bundle(1),trim(aeroname),&
rank3,ier)
if (ier==0) then
ges_pm10(:,:,:,1)=ges_pm10(:,:,:,1)+rank3
do ifld=2,nfldsig
call gsi_bundlegetpointer(gsi_chemguess_bundle(ifld),trim(aeroname),rank3,ier)
ges_pm10(:,:,:,ifld)=ges_pm10(:,:,:,ifld)+rank3
enddo
else
write(6,*) 'setuppm10: ',trim(aeroname),' not found in chem bundle, ier= ',ier
call stop2(453)
endif
aeroname='dust3'
call gsi_bundlegetpointer(gsi_chemguess_bundle(1),TRIM(aeroname),&
rank3,ier)
if (ier==0) then
ges_pm10(:,:,:,1)=ges_pm10(:,:,:,1)+rank3
do ifld=2,nfldsig
call gsi_bundlegetpointer(gsi_chemguess_bundle(ifld),TRIM(aeroname),rank3,ier)
ges_pm10(:,:,:,ifld)=ges_pm10(:,:,:,ifld)+rank3
enddo
else
write(6,*) 'setuppm10: ',TRIM(aeroname),' not found in chem bundle, ier= ',ier
call stop2(453)
endif
aeroname='dust4'
call gsi_bundlegetpointer(gsi_chemguess_bundle(1),TRIM(aeroname),&
rank3,ier)
if (ier==0) then
ges_pm10(:,:,:,1)=ges_pm10(:,:,:,1)+rank3*d_10
do ifld=2,nfldsig
call gsi_bundlegetpointer(gsi_chemguess_bundle(ifld),TRIM(aeroname),rank3,ier)
ges_pm10(:,:,:,ifld)=ges_pm10(:,:,:,ifld)+rank3*d_10
enddo
else
write(6,*) 'setuppm10: ',TRIM(aeroname),' not found in chem bundle, ier= ',ier
call stop2(453)
endif
else
write(6,*) 'setuppm10: inconsistent vector sizes (nfldsig,size(chemguess_bundle) ',&
nfldsig,size(gsi_chemguess_bundle)
call stop2(420)
endif
endif
! initialize arrays
read(lunin)data,luse,ioid
dup=one
do i=1,nobs
muse(i) = (icuse(nint(data(iikx,i))) <= jiter)
enddo
do k=1,nobs
do l=k+1,nobs
if(data(ilat,k) == data(ilat,l) .and. &
data(ilon,k) == data(ilon,l) .and. &
data(ielev,k) == data(ielev,l) .and. &
data(isite,k) == data(isite,l) .and. &
muse(k) .and. muse(l)) then
tfact = min(one,abs(data(itime,k)-data(itime,l))/dfact1)
dup(k)=dup(k)+one-tfact*tfact*(one-dfact)
dup(l)=dup(l)+one-tfact*tfact*(one-dfact)
end if
end do
end do
! if requested, save select data for output to diagnostic file
if(conv_diagsave)then
ii=0
if (lobsdiagsave) nrealdiag=nrealdiag+4*miter+1
allocate(cdiagbuf(nobs),rdiagbuf(nrealdiag,nobs))
if (netcdf_diag) call init_netcdf_diag_
end if
mm1=mype+1
call dtime_setup()
if (oneobtest_chem) then
WRITE(6,*)'setuppm10: oneobtest_chem available only for pm2_5'
CALL stop2(424)
endif
if (trim(isis)=='TEOM') then
DO i=1,nobs
dtime=data(itime,i)
call dtime_check(dtime, in_curbin, in_anybin)
if(.not.in_anybin) cycle
if (nobs_bins > 1) then
ibin = nint( dtime/hr_obsbin ) + 1
else
ibin = 1
endif
if (ibin < 1 .or. ibin > nobs_bins) &
write(6,*)mype,'error nobs_bins,ibin= ',nobs_bins,ibin
! link obs to diagnostics structure
if(luse_obsdiag)then
if (.not.lobsdiag_allocated) then
if (.not.associated(obsdiags(i_pm10_ob_type,ibin)%head)) then
obsdiags(i_pm10_ob_type,ibin)%n_alloc = 0
allocate(obsdiags(i_pm10_ob_type,ibin)%head,stat=istat)
if (istat/=0) then
write(6,*)'setupq: failure to allocate obsdiags',istat
call stop2(421)
end if
obsdiags(i_pm10_ob_type,ibin)%tail => obsdiags(i_pm10_ob_type,ibin)%head
else
allocate(obsdiags(i_pm10_ob_type,ibin)%tail%next,stat=istat)
if (istat/=0) then
write(6,*)'setupq: failure to allocate obsdiags',istat
call stop2(422)
end if
obsdiags(i_pm10_ob_type,ibin)%tail => obsdiags(i_pm10_ob_type,ibin)%tail%next
end if
obsdiags(i_pm10_ob_type,ibin)%n_alloc = obsdiags(i_pm10_ob_type,ibin)%n_alloc +1
allocate(obsdiags(i_pm10_ob_type,ibin)%tail%muse(miter+1))
allocate(obsdiags(i_pm10_ob_type,ibin)%tail%nldepart(miter+1))
allocate(obsdiags(i_pm10_ob_type,ibin)%tail%tldepart(miter))
allocate(obsdiags(i_pm10_ob_type,ibin)%tail%obssen(miter))
obsdiags(i_pm10_ob_type,ibin)%tail%indxglb=ioid(i)
obsdiags(i_pm10_ob_type,ibin)%tail%nchnperobs=-99999
obsdiags(i_pm10_ob_type,ibin)%tail%luse=luse(i)
obsdiags(i_pm10_ob_type,ibin)%tail%muse(:)=.false.
obsdiags(i_pm10_ob_type,ibin)%tail%nldepart(:)=-huge(zero)
obsdiags(i_pm10_ob_type,ibin)%tail%tldepart(:)=zero
obsdiags(i_pm10_ob_type,ibin)%tail%wgtjo=-huge(zero)
obsdiags(i_pm10_ob_type,ibin)%tail%obssen(:)=zero
n_alloc(ibin) = n_alloc(ibin) +1
my_diag => obsdiags(i_pm10_ob_type,ibin)%tail
my_diag%idv = is
my_diag%iob = ioid(i)
my_diag%ich = 1
my_diag%elat= data(ilate,i)
my_diag%elon= data(ilone,i)
else
if (.not.associated(obsdiags(i_pm10_ob_type,ibin)%tail)) then
obsdiags(i_pm10_ob_type,ibin)%tail => obsdiags(i_pm10_ob_type,ibin)%head
else
obsdiags(i_pm10_ob_type,ibin)%tail => obsdiags(i_pm10_ob_type,ibin)%tail%next
end if
if (.not.associated(obsdiags(i_pm10_ob_type,ibin)%tail)) then
call die(myname,'.not.associated(obsdiags(i_pm10_ob_type,ibin)%tail)')
end if
if (obsdiags(i_pm10_ob_type,ibin)%tail%indxglb/=ioid(i)) then
write(6,*)'setuppm10: index error'
call stop2(423)
end if
endif
endif
if(.not.in_curbin) cycle
dlat=data(ilat,i)
dlon=data(ilon,i)
conc=data(iconc,i)
elevobs=data(ielev,i)
ikx=nint(data(iikx,i))
site_id=data(iid,i)
call tintrp2a11(ges_z,elevges,dlat,dlon,dtime,hrdifsig,&
mype,nfldsig)
!obs are conc
!wrf state vars are as mix ratio
!cmaq pm10 is as conc
!might convert for cmaq at some point as well
if (wrf_mass_regional) then
call tintrp2a11(ges_ps,ps_ges,dlat,dlon,dtime,hrdifsig,&
mype,nfldsig)
call tintrp2a11(ges_tv(:,:,1,nfldsig),tv_ges,dlat,dlon,dtime,hrdifsig,&
mype,nfldsig)
conc=conc/(ps_ges*r1000/(rd*tv_ges))
endif
!if elevobs is known than calculate difference otherwise
!assume that difference is acceptable
if (elevobs > elev_missing) then
elevdiff=abs(elevobs-elevges)
else
elevdiff=zero
!if elevation unknown include observation nevertheless
endif
call tintrp2a11(ges_pm10,pm10ges,dlat,dlon,dtime,hrdifsig,&
mype,nfldsig)
innov = conc - pm10ges
error=one/data(ierror,i)
ratio_errors=one/sqrt(real(dup(i)))
innov_error = error*innov
if (abs(innov) > cgross(ikx) .or. &
conc > pm10_teom_max .or. &
elevdiff > elev_tolerance) then
muse(i)=.false.
endif
rat_err2 = ratio_errors**2
if(luse(i))then
innov_error2 = innov_error*innov_error
exp_arg = -half*innov_error2
rat_err2 = ratio_errors**2
if (cvar_pg(ikx) > tiny_r_kind ) then
arg = exp(exp_arg)
wnotgross= one-cvar_pg(ikx)
cg_pm10=cvar_b(ikx)
wgross = cg_term*cvar_pg(ikx)/(cg_pm10*wnotgross)
term = log((arg+wgross)/(one+wgross))
wgt = one-wgross/(arg+wgross)
rwgt = wgt/wgtlim
else
term = exp_arg
wgt = wgtlim
rwgt = wgt/wgtlim
endif
valqc = -two*rat_err2*term
endif
if(luse_obsdiag)then
obsdiags(i_pm10_ob_type,ibin)%tail%muse(jiter)=muse(i)
obsdiags(i_pm10_ob_type,ibin)%tail%nldepart(jiter)=innov
obsdiags(i_pm10_ob_type,ibin)%tail%wgtjo= (error*ratio_errors)**2
end if
if (.not. last .and. muse(i)) then
allocate(my_head)
m_alloc(ibin) = m_alloc(ibin) +1
my_node => my_head
call obsLList_appendNode(pm10head(ibin),my_node)
my_node => null()
my_head%idv = is
my_head%iob = ioid(i)
my_head%elat= data(ilate,i)
my_head%elon= data(ilone,i)
call get_ij(mm1,dlat,dlon,&
my_head%ij,tempwij)
my_head%ij (5:8)=my_head%ij(1:4)
my_head%wij(1:4)=tempwij
my_head%wij(5:8)=zero
my_head%res = innov
my_head%err2 = error**2
my_head%raterr2= ratio_errors**2
my_head%time = dtime
my_head%b = cvar_b(ikx)
my_head%pg = cvar_pg(ikx)
my_head%luse = luse(i)
if(luse_obsdiag)then
my_head%diags => &
obsdiags(i_pm10_ob_type,ibin)%tail
my_diag => my_head%diags
if(my_head%idv /= my_diag%idv .or. &
my_head%iob /= my_diag%iob ) then
call perr(myname,'mismatching %[head,diags]%(idv,iob,ibin) =',&
(/is,ioid(i),ibin/))
call perr(myname,'my_head%(idv,iob) =',(/my_head%idv,my_head%iob/))
call perr(myname,'my_diag%(idv,iob) =',(/my_diag%idv,my_diag%iob/))
call die(myname)
endif
end if
my_head => null()
endif
! save select output for diagnostic file
if (conv_diagsave) then
ii=ii+1
call tintrp2a11(ges_ps,ps_ges,dlat,dlon,dtime,hrdifsig,&
mype,nfldsig)
ps_ges=ps_ges*r10 ! convert from cb to hpa
write(station_id,'(Z8)')nint(site_id)
err_input = data(ierror,i)
err_adjst = data(ierror,i)
if (ratio_errors*error>tiny_r_kind) then
err_final = one/(ratio_errors*error)
else
err_final = huge_single
endif
errinv_input = huge_single
errinv_adjst = huge_single
errinv_final = huge_single
if (err_input>tiny_r_kind) errinv_input=one/err_input
if (err_adjst>tiny_r_kind) errinv_adjst=one/err_adjst
if (err_final>tiny_r_kind) errinv_final=one/err_final
if (binary_diag) call contents_binary_diag_
if (netcdf_diag) call contents_netcdf_diag_
endif
! end of loop over observations
enddo
else
!!will be similar except for get_ijk
!!if not teom isis fill in
!!should be used for other in-situ obs e.g. soundings/aircraft e.g.
endif
! Release memory of local guess arrays
call final_vars_
!! write information to diagnostic file
if(conv_diagsave) then
if(netcdf_diag) call nc_diag_write
if(binary_diag .and.ii>0) then
write(7)cvar,nchar,nrealdiag,ii,mype,nrealdiag
write(7)cdiagbuf(1:ii),rdiagbuf(:,1:ii)
deallocate(cdiagbuf,rdiagbuf)
end if
end if
!
return
contains
subroutine check_vars_ (proceed)
use chemmod, only: naero_gocart_wrf,aeronames_gocart_wrf
logical,intent(inout) :: proceed
integer(i_kind) ivar, istatus
! Check to see if required guess fields are available
call gsi_metguess_get ('var::ps', ivar, istatus )
proceed=ivar>0
call gsi_metguess_get ('var::z' , ivar, istatus )
proceed=proceed.and.ivar>0
!
if (wrf_mass_regional .and. laeroana_gocart) then
do i=1,naero_gocart_wrf
aeroname=upper2lower(aeronames_gocart_wrf(i))
call gsi_chemguess_get ('var::'//trim(aeroname), ivar, istatus )
if (ivar == 0) exit
enddo
endif
proceed=proceed.and.ivar>0
end subroutine check_vars_
subroutine init_vars_
real(r_kind),dimension(:,: ),pointer:: rank2=>NULL()
real(r_kind),dimension(:,:,:),pointer:: rank3=>NULL()
character(len=5) :: varname
integer(i_kind) ifld, istatus
! If require guess vars available, extract from bundle ...
if(size(gsi_metguess_bundle)==nfldsig) then
! get ps ...
varname='ps'
call gsi_bundlegetpointer(gsi_metguess_bundle(1),trim(varname),rank2,istatus)
if (istatus==0) then
if(allocated(ges_ps))then
write(6,*) trim(myname), ': ', trim(varname), ' already incorrectly alloc '
call stop2(999)
endif
allocate(ges_ps(size(rank2,1),size(rank2,2),nfldsig))
ges_ps(:,:,1)=rank2
do ifld=2,nfldsig
call gsi_bundlegetpointer(gsi_metguess_bundle(ifld),trim(varname),rank2,istatus)
ges_ps(:,:,ifld)=rank2
enddo
else
write(6,*) trim(myname),': ', trim(varname), ' not found in met bundle, ier= ',istatus
call stop2(999)
endif
! get z ...
varname='z'
call gsi_bundlegetpointer(gsi_metguess_bundle(1),trim(varname),rank2,istatus)
if (istatus==0) then
if(allocated(ges_z))then
write(6,*) trim(myname), ': ', trim(varname), ' already incorrectly alloc '
call stop2(999)
endif
allocate(ges_z(size(rank2,1),size(rank2,2),nfldsig))
ges_z(:,:,1)=rank2
do ifld=2,nfldsig
call gsi_bundlegetpointer(gsi_metguess_bundle(ifld),trim(varname),rank2,istatus)
ges_z(:,:,ifld)=rank2
enddo
else
write(6,*) trim(myname),': ', trim(varname), ' not found in met bundle, ier= ',istatus
call stop2(999)
endif
! get tv ...
varname='tv'
call gsi_bundlegetpointer(gsi_metguess_bundle(1),trim(varname),rank3,istatus)
if (istatus==0) then
if(allocated(ges_tv))then
write(6,*) trim(myname), ': ', trim(varname), ' already incorrectly alloc '
call stop2(999)
endif
allocate(ges_tv(size(rank3,1),size(rank3,2),size(rank3,3),nfldsig))
ges_tv(:,:,:,1)=rank3
do ifld=2,nfldsig
call gsi_bundlegetpointer(gsi_metguess_bundle(ifld),trim(varname),rank3,istatus)
ges_tv(:,:,:,ifld)=rank3
enddo
else
write(6,*) trim(myname),': ', trim(varname), ' not found in met bundle, ier= ',istatus
call stop2(999)
endif
else
write(6,*) trim(myname), ': inconsistent vector sizes (nfldsig,size(metguess_bundle) ',&
nfldsig,size(gsi_metguess_bundle)
call stop2(999)
endif
end subroutine init_vars_
subroutine init_netcdf_diag_
character(len=80) string
character(len=128) diag_conv_file
integer(i_kind) ncd_fileid,ncd_nobs
logical append_diag
logical,parameter::verbose=.false.
write(string,900) jiter
900 format('conv_pm10_',i2.2,'.nc4')
diag_conv_file=trim(dirname) // trim(string)
inquire(file=diag_conv_file, exist=append_diag)
if (append_diag) then
call nc_diag_read_init(diag_conv_file,ncd_fileid)
ncd_nobs = nc_diag_read_get_dim(ncd_fileid,'nobs')
call nc_diag_read_close(diag_conv_file)
if (ncd_nobs > 0) then
if(verbose) print *,'file ' // trim(diag_conv_file) // ' exists. Appending. nobs,mype=',ncd_nobs,mype
else
if(verbose) print *,'file ' // trim(diag_conv_file) // ' exists but contains no obs. Not appending. nobs,mype=',ncd_nobs,mype
append_diag = .false. ! if there are no obs in existing file, then do not try to append
endif
end if
call nc_diag_init(diag_conv_file, append=append_diag)
if (.not. append_diag) then ! don't write headers on append - the module will break?
call nc_diag_header("date_time",ianldate )
endif
end subroutine init_netcdf_diag_
subroutine contents_binary_diag_
cdiagbuf(ii) = station_id ! station id
rdiagbuf(1,ii) = ictype(ikx) ! observation type
rdiagbuf(2,ii) = icsubtype(ikx) ! observation subtype
rdiagbuf(3,ii) = data(ilate,i) ! observation latitude (degrees)
rdiagbuf(4,ii) = data(ilone,i) ! observation longitude (degrees)
rdiagbuf(5,ii) = data(ielev,i) ! station elevation (meters)
rdiagbuf(6,ii) = ps_ges ! observation pressure (hpa)
rdiagbuf(7,ii) = data(ielev,i) ! observation height (meters)
rdiagbuf(8,ii) = dtime-time_offset ! obs time (hours relative to analysis time)
rdiagbuf(9,ii) = zero !data(iqc,i) input prepbufr qc or event mark
rdiagbuf(10,ii) = zero !data(iqt,i) setup qc or event mark (currently qtflg only)
rdiagbuf(11,ii) = one ! read_prepbufr data usage flag
if(muse(i)) then
rdiagbuf(12,ii) = one ! analysis usage flag (1=use, -1=not used)
else
rdiagbuf(12,ii) = -one
endif
rdiagbuf(13,ii) = rwgt ! nonlinear qc relative weight
rdiagbuf(14,ii) = errinv_input ! prepbufr inverse obs error (k**-1)
rdiagbuf(15,ii) = errinv_adjst ! read_prepbufr inverse obs error (k**-1)
rdiagbuf(16,ii) = errinv_final ! final inverse observation error (k**-1)
rdiagbuf(17,ii) = data(iconc,i) ! temperature observation (k)
rdiagbuf(18,ii) = innov ! obs-ges used in analysis (ugm^-3)
rdiagbuf(19,ii) = innov ! obs-ges w/o bias correction (ugm^-3) (future slot)
idia=nrealdiag
if (lobsdiagsave) then
do jj=1,miter
idia=idia+1
if (obsdiags(i_pm10_ob_type,ibin)%tail%muse(jj)) then
rdiagbuf(idia,ii) = one
else
rdiagbuf(idia,ii) = -one
endif
enddo
do jj=1,miter+1
idia=idia+1
rdiagbuf(idia,ii) = obsdiags(i_pm10_ob_type,ibin)%tail%nldepart(jj)
enddo
do jj=1,miter
idia=idia+1
rdiagbuf(idia,ii) = obsdiags(i_pm10_ob_type,ibin)%tail%tldepart(jj)
enddo
do jj=1,miter
idia=idia+1
rdiagbuf(idia,ii) = obsdiags(i_pm10_ob_type,ibin)%tail%obssen(jj)
enddo
endif
end subroutine contents_binary_diag_
subroutine contents_netcdf_diag_
! Observation class
character(7),parameter :: obsclass = ' pm10'
real(r_kind),dimension(miter) :: obsdiag_iuse
call nc_diag_metadata("Station_ID", station_id )
call nc_diag_metadata("Observation_Class", obsclass )
call nc_diag_metadata("Observation_Type", ictype(ikx) )
call nc_diag_metadata("Observation_Subtype", icsubtype(ikx) )
call nc_diag_metadata("Latitude", data(ilate,i) )
call nc_diag_metadata("Longitude", data(ilone,i) )
call nc_diag_metadata("Station_Elevation", data(ielev,i) )
call nc_diag_metadata("Pressure", ps_ges )
call nc_diag_metadata("Height", data(ielev,i) )
call nc_diag_metadata("Time", dtime-time_offset )
call nc_diag_metadata("Prep_QC_Mark", zero )
call nc_diag_metadata("Prep_Use_Flag", one )
! call nc_diag_metadata("Nonlinear_QC_Var_Jb", var_jb )
call nc_diag_metadata("Nonlinear_QC_Rel_Wgt", rwgt )
if(muse(i)) then
call nc_diag_metadata("Analysis_Use_Flag", one )
else
call nc_diag_metadata("Analysis_Use_Flag", -one )
endif
call nc_diag_metadata("Errinv_Input", errinv_input )
call nc_diag_metadata("Errinv_Adjust", errinv_adjst )
call nc_diag_metadata("Errinv_Final", errinv_final )
call nc_diag_metadata("Observation", data(iconc,i) )
call nc_diag_metadata("Obs_Minus_Forecast_adjusted", innov )
call nc_diag_metadata("Obs_Minus_Forecast_unadjusted", innov )
if (lobsdiagsave) then
do jj=1,miter
if (obsdiags(i_pm10_ob_type,ibin)%tail%muse(jj)) then
obsdiag_iuse(jj) = one
else
obsdiag_iuse(jj) = -one
endif
enddo
call nc_diag_data2d("ObsDiagSave_iuse", obsdiag_iuse )
call nc_diag_data2d("ObsDiagSave_nldepart", obsdiags(i_pm10_ob_type,ibin)%tail%nldepart )
call nc_diag_data2d("ObsDiagSave_tldepart", obsdiags(i_pm10_ob_type,ibin)%tail%tldepart )
call nc_diag_data2d("ObsDiagSave_obssen", obsdiags(i_pm10_ob_type,ibin)%tail%obssen )
endif
end subroutine contents_netcdf_diag_
subroutine final_vars_
if(allocated(ges_tv)) deallocate(ges_tv)
if(allocated(ges_pm10)) deallocate(ges_pm10)
if(allocated(ges_z )) deallocate(ges_z )
if(allocated(ges_ps)) deallocate(ges_ps)
end subroutine final_vars_
end subroutine setuppm10