#!/bin/bash
#PBS -N obsproc_%JTYP%_prep_post_%PDY%_%CC%_%DESC%
#PBS -j oe
#PBS -l walltime=0:10:00
#PBS -q dev
#PBS -A OBSPROC-DEV
#PBS -l select=1:ncpus=1:mem=1gb
#PBS -l debug=true

#####################################################################
# Submit notes:
## Run from [ps]tmp when running manually
## When running from cron, output is written to /u/$USER. Bottom of trigger mv's to stmp
# For specific PDY:
# > jtyp=rtma cyc=00 tmmark=tm00 PDY=20170126 desc=somethingfun /u/Shelley.Melchior/bin/cycqsub /path/to/triggers/jrtma_prep_post.wc2.pbs
# For latest/current PDY:
# > jtyp=rtma cyc=00 tmmark=tm00 /u/Shelley.Melchior/bin/cycqsub /path/to/triggers/jrtma_*.ph3.lsf
# cycqsub location: /u/Shelley.Melchior/bin
#####################################################################

set -xa

export envir=prod
export cyc=%CC%
export cycM=%CCM%
DESC=%DESC%
JTYP=%JTYP%
# Test if this is an hourly RTMA run or a Rapid Update RTMA run; assign job accordingly
if [ -z "$cycM" ]; then
  export job=${JTYP}_dump_$cyc
else
  export job=${JTYP}_ru_dump_${cyc}${cycM}
fi
export jobid=$job.$PBS_JOBID
export PDY=%PDY%

userROOT=/lfs/h2/emc/obsproc/noscrub/$USER

export obsproc_ver=v1.0
export obsproc_ver_pckg=v1.0.0
export prepobs_ver=1.0.0
export obsNET=obsproc
PACKAGEROOTpara=/lfs/h1/ops/para/packages
#export HOMEobsproc=${PACKAGEROOTpara}/obsproc.${obsproc_ver_pckg}   # NCO para
#export HOMEobsproc=${PACKAGEROOT}/obsproc.${obsproc_ver_pckg}       # NCO prod
export HOMEobsproc=${userROOT}/install/obsproc-rmprep           # local

VERSION_FILE=${HOMEobsproc}/versions/run.ver
if [ -f $VERSION_FILE ]; then
   . $VERSION_FILE
else
 echo Need version info...  Exiting...
 exit 7
fi

#Load the modules
module load grib_util/${grib_util_ver}
module load netcdf/${netcdf_ver}
module load intel/${intel_ver}
module load craype/${craype_ver}
module load cray-mpich/${cray_mpich_ver}
module load cray-pals/${cray_pals_ver}
module load cfp/${cfp_ver}
# use local bufr_dump installation
#module unload bufr_dump
#module use ${userROOT}/install/bufr_dump/modulefiles
module load bufr_dump/${bufr_dump_ver}
# use local prepobs installation
#module unload prepobs
#module use ${userROOT}/install/prepobs/modulefiles
module load prepobs/${prepobs_ver}

#Check if they exist
if [[ $(echo $LOADEDMODULES | egrep -c "(^|:)grib_util/") -eq 0 ]]; then echo "grib_util is not loaded!"; fi
if [[ $(echo $LOADEDMODULES | egrep -c "(^|:)netcdf/") -eq 0 ]]; then echo "netcdf is not loaded!"; fi
if [[ $(echo $LOADEDMODULES | egrep -c "(^|:)bufr_dump/") -eq 0 ]]; then echo "bufr_dump is not loaded!"; fi
if [[ $(echo $LOADEDMODULES | egrep -c "(^|:)prepobs/") -eq 0 ]]; then echo "prepobs is not loaded!"; fi
if [[ $(echo $LOADEDMODULES | egrep -c "(^|:)intel/") -eq 0 ]]; then echo "intel is not loaded!"; fi
if [[ $(echo $LOADEDMODULES | egrep -c "(^|:)craype/") -eq 0 ]]; then echo "craype is not loaded!"; fi
if [[ $(echo $LOADEDMODULES | egrep -c "(^|:)cray-mpich/") -eq 0 ]]; then echo "cray-mpich is not loaded!"; fi
if [[ $(echo $LOADEDMODULES | egrep -c "(^|:)cray-pals/") -eq 0 ]]; then echo "cray-pals is not loaded!"; fi
if [[ $(echo $LOADEDMODULES | egrep -c "(^|:)cfp/") -eq 0 ]]; then echo "cfp is not loaded!"; fi

export SENDECF=NO   # developer
export SENDDBN=NO   # developer
export SENDSDM=NO   # developer

export DATAROOT=/lfs/h2/emc/stmp/$USER
if [ -z "$cycM" ]; then
  export jlogfile=/lfs/h2/emc/stmp/${USER}/${JTYP}.${PDY}.jlogfile
else
  export jlogfile=/lfs/h2/emc/stmp/${USER}/${JTYP}_ru.${PDY}.jlogfile
fi

if [ -z "$cycM" ]; then
  export COMIN=${DATAROOT}/CRON/${DESC}/com/${obsNET}/$obsproc_ver/${JTYP}.${PDY}
  export COMOUT=${DATAROOT}/CRON/${DESC}/com/${obsNET}/$obsproc_ver/${JTYP}.${PDY}
else
  export COMIN=${DATAROOT}/CRON/${DESC}/com/${obsNET}/$obsproc_ver/${JTYP}_ru.${PDY}
  export COMOUT=${DATAROOT}/CRON/${DESC}/com/${obsNET}/$obsproc_ver/${JTYP}_ru.${PDY}
fi

export KEEPDATA=YES
export LOUD=ON
export DEBUG_LEVEL=3

$HOMEobsproc/jobs/JOBSPROC_RTMA_PREP_POST
err=$?

# When run from cron, the stdout is written to /u/$USER
# mv to stmp
pbsjobid=$(echo $PBS_JOBID | cut -d'.' -f1)
cronlogfile=/u/$USER/$PBS_JOBNAME.o$pbsjobid
outputdir=/lfs/h2/emc/stmp/${USER}/CRON/${DESC}/output
if [ -f "$cronlogfile" ]; then
  mkdir -p $outputdir
  mv $cronlogfile ${outputdir}/$PBS_JOBNAME.o$pbsjobid
fi

exit