/* * Copyright 1997, Regents of the University of Minnesota * * gkmetis.c * * This is the entry point of parallel geometry based partitioning * routines * * Started 10/19/96 * George * * $Id: gkmetis.c 10663 2011-08-04 03:54:49Z karypis $ * */ #include /*********************************************************************************** * This function is the entry point of the parallel kmetis algorithm that uses * coordinates to compute an initial graph distribution. ************************************************************************************/ int ParMETIS_V3_PartGeomKway(idx_t *vtxdist, idx_t *xadj, idx_t *adjncy, idx_t *vwgt, idx_t *adjwgt, idx_t *wgtflag, idx_t *numflag, idx_t *ndims, real_t *xyz, idx_t *ncon, idx_t *nparts, real_t *tpwgts, real_t *ubvec, idx_t *options, idx_t *edgecut, idx_t *part, MPI_Comm *comm) { idx_t h, i, j, npes, mype, status, nvtxs, seed, dbglvl; idx_t cut, gcut, maxnvtxs; idx_t moptions[METIS_NOPTIONS]; ctrl_t *ctrl; graph_t *graph, *mgraph; real_t balance; size_t curmem; /* Check the input parameters and return if an error */ status = CheckInputsPartGeomKway(vtxdist, xadj, adjncy, vwgt, adjwgt, wgtflag, numflag, ndims, xyz, ncon, nparts, tpwgts, ubvec, options, edgecut, part, comm); if (GlobalSEMinComm(*comm, status) == 0) return METIS_ERROR; status = METIS_OK; gk_malloc_init(); curmem = gk_GetCurMemoryUsed(); /* Setup the ctrl */ ctrl = SetupCtrl(PARMETIS_OP_GKMETIS, options, *ncon, *nparts, tpwgts, ubvec, *comm); npes = ctrl->npes; mype = ctrl->mype; /* Take care the nparts == 1 case */ if (*nparts == 1) { iset(vtxdist[mype+1]-vtxdist[mype], (*numflag == 0 ? 0 : 1), part); *edgecut = 0; goto DONE; } /* Take care of npes == 1 case */ if (npes == 1) { nvtxs = vtxdist[1] - vtxdist[0]; /* subtraction is required when numflag==1 */ METIS_SetDefaultOptions(moptions); moptions[METIS_OPTION_NUMBERING] = *numflag; status = METIS_PartGraphKway(&nvtxs, ncon, xadj, adjncy, vwgt, NULL, adjwgt, nparts, tpwgts, ubvec, moptions, edgecut, part); goto DONE; } /* Setup the graph */ if (*numflag > 0) ChangeNumbering(vtxdist, xadj, adjncy, part, npes, mype, 1); graph = SetupGraph(ctrl, *ncon, vtxdist, xadj, vwgt, NULL, adjncy, adjwgt, *wgtflag); gk_free((void **)&graph->nvwgt, LTERM); /* Allocate the workspace */ AllocateWSpace(ctrl, 10*graph->nvtxs); /* Compute the initial npes-way partitioning geometric partitioning */ STARTTIMER(ctrl, ctrl->TotalTmr); Coordinate_Partition(ctrl, graph, *ndims, xyz, 1); STOPTIMER(ctrl, ctrl->TotalTmr); /* Move the graph according to the partitioning */ STARTTIMER(ctrl, ctrl->MoveTmr); ctrl->nparts = npes; mgraph = MoveGraph(ctrl, graph); ctrl->nparts = *nparts; SetupGraph_nvwgts(ctrl, mgraph); /* compute nvwgts for the moved graph */ if (ctrl->dbglvl&DBG_INFO) { CommInterfaceData(ctrl, graph, graph->where, graph->where+graph->nvtxs); for (cut=0, i=0; invtxs; i++) { for (j=graph->xadj[i]; jxadj[i+1]; j++) { if (graph->where[i] != graph->where[graph->adjncy[j]]) cut += graph->adjwgt[j]; } } gcut = GlobalSESum(ctrl, cut)/2; maxnvtxs = GlobalSEMax(ctrl, mgraph->nvtxs); balance = (real_t)(maxnvtxs)/((real_t)(graph->gnvtxs)/(real_t)(npes)); rprintf(ctrl, "XYZ Cut: %6"PRIDX" \tBalance: %6.3"PRREAL" [%"PRIDX" %"PRIDX" %"PRIDX"]\n", gcut, balance, maxnvtxs, graph->gnvtxs, npes); } STOPTIMER(ctrl, ctrl->MoveTmr); /* Compute the partition of the moved graph */ STARTTIMER(ctrl, ctrl->TotalTmr); ctrl->CoarsenTo = gk_min(vtxdist[npes]+1, 25*(*ncon)*gk_max(npes, *nparts)); if (vtxdist[npes] < SMALLGRAPH || vtxdist[npes] < npes*20 || GlobalSESum(ctrl, mgraph->nedges) == 0) { /* serially */ IFSET(ctrl->dbglvl, DBG_INFO, rprintf(ctrl, "Partitioning a graph of size %"PRIDX" serially\n", vtxdist[npes])); PartitionSmallGraph(ctrl, mgraph); } else { /* in parallel */ Global_Partition(ctrl, mgraph); } ParallelReMapGraph(ctrl, mgraph); /* Invert the ordering back to the original graph */ ctrl->nparts = npes; ProjectInfoBack(ctrl, graph, part, mgraph->where); ctrl->nparts = *nparts; *edgecut = mgraph->mincut; STOPTIMER(ctrl, ctrl->TotalTmr); /* Print some stats */ IFSET(ctrl->dbglvl, DBG_TIME, PrintTimingInfo(ctrl)); IFSET(ctrl->dbglvl, DBG_TIME, gkMPI_Barrier(ctrl->gcomm)); IFSET(ctrl->dbglvl, DBG_INFO, PrintPostPartInfo(ctrl, mgraph, 0)); FreeGraph(mgraph); FreeInitialGraphAndRemap(graph); if (*numflag > 0) ChangeNumbering(vtxdist, xadj, adjncy, part, npes, mype, 0); DONE: FreeCtrl(&ctrl); if (gk_GetCurMemoryUsed() - curmem > 0) { printf("ParMETIS appears to have a memory leak of %zdbytes. Report this.\n", (ssize_t)(gk_GetCurMemoryUsed() - curmem)); } gk_malloc_cleanup(0); return (int)status; } /*********************************************************************************** * This function is the entry point of the parallel ordering algorithm. * This function assumes that the graph is already nice partitioned among the * processors and then proceeds to perform recursive bisection. ************************************************************************************/ int ParMETIS_V3_PartGeom(idx_t *vtxdist, idx_t *ndims, real_t *xyz, idx_t *part, MPI_Comm *comm) { idx_t i, nvtxs, firstvtx, npes, mype, status; idx_t *xadj, *adjncy; ctrl_t *ctrl=NULL; graph_t *graph=NULL; size_t curmem; /* Check the input parameters and return if an error */ status = CheckInputsPartGeom(vtxdist, ndims, xyz, part, comm); if (GlobalSEMinComm(*comm, status) == 0) return METIS_ERROR; status = METIS_OK; gk_malloc_init(); curmem = gk_GetCurMemoryUsed(); /* Setup the ctrl */ ctrl = SetupCtrl(PARMETIS_OP_GMETIS, NULL, 1, 1, NULL, NULL, *comm); /*ctrl->dbglvl=15;*/ npes = ctrl->npes; mype = ctrl->mype; /* Trivial case when npes == 1 */ if (npes == 1) { iset(vtxdist[mype+1]-vtxdist[mype], 0, part); goto DONE; } /* Setup a fake graph to allow the rest of the code to work unchanged */ nvtxs = vtxdist[mype+1]-vtxdist[mype]; firstvtx = vtxdist[mype]; xadj = imalloc(nvtxs+1, "ParMETIS_PartGeom: xadj"); adjncy = imalloc(nvtxs, "ParMETIS_PartGeom: adjncy"); for (i=0; invtxs); /* Compute the initial geometric partitioning */ STARTTIMER(ctrl, ctrl->TotalTmr); Coordinate_Partition(ctrl, graph, *ndims, xyz, 0); icopy(graph->nvtxs, graph->where, part); STOPTIMER(ctrl, ctrl->TotalTmr); IFSET(ctrl->dbglvl, DBG_TIME, PrintTimingInfo(ctrl)); gk_free((void **)&xadj, (void **)&adjncy, LTERM); FreeInitialGraphAndRemap(graph); DONE: FreeCtrl(&ctrl); if (gk_GetCurMemoryUsed() - curmem > 0) { printf("ParMETIS appears to have a memory leak of %zdbytes. Report this.\n", (ssize_t)(gk_GetCurMemoryUsed() - curmem)); } gk_malloc_cleanup(0); return (int)status; }