SUBROUTINE read_BioPar (model, inp, out, Lwrite)
!
!git $Id$
!svn $Id: npzd_Powell_inp.h 1151 2023-02-09 03:08:53Z arango $
!================================================== Hernan G. Arango ===
! Copyright (c) 2002-2023 The ROMS/TOMS Group !
! Licensed under a MIT/X style license !
! See License_ROMS.md !
!=======================================================================
! !
! This routine reads in Powell et al. (2006) ecosystem model input !
! parameters. They are specified in input script "npzd_Powell.in". !
! !
!=======================================================================
!
USE mod_param
USE mod_parallel
USE mod_biology
USE mod_ncparam
USE mod_scalars
!
USE inp_decode_mod
!
implicit none
!
! Imported variable declarations
!
logical, intent(in) :: Lwrite
integer, intent(in) :: model, inp, out
!
! Local variable declarations.
!
integer :: Npts, Nval
integer :: iTrcStr, iTrcEnd
integer :: i, ifield, igrid, itracer, itrc, ng, nline, status
logical, dimension(NBT,Ngrids) :: Ltrc
real(r8), dimension(NBT,Ngrids) :: Rbio
real(dp), dimension(nRval) :: Rval
character (len=40 ) :: KeyWord
character (len=256) :: line
character (len=256), dimension(nCval) :: Cval
!
!-----------------------------------------------------------------------
! Initialize.
!-----------------------------------------------------------------------
!
igrid=1 ! nested grid counter
itracer=0 ! LBC tracer counter
iTrcStr=1 ! first LBC tracer to process
iTrcEnd=NBT ! last LBC tracer to process
nline=0 ! LBC multi-line counter
!
!-----------------------------------------------------------------------
! Read in NPZD biological model (Powell et al., 2006) parameters.
!-----------------------------------------------------------------------
!
#ifdef ANA_BIOLOGY
IF (.not.allocated(BioIni)) allocate ( BioIni(MT,Ngrids) )
#endif
DO WHILE (.TRUE.)
READ (inp,'(a)',ERR=10,END=20) line
status=decode_line(line, KeyWord, Nval, Cval, Rval)
IF (status.gt.0) THEN
SELECT CASE (TRIM(KeyWord))
CASE ('Lbiology')
Npts=load_l(Nval, Cval, Ngrids, Lbiology)
CASE ('BioIter')
Npts=load_i(Nval, Rval, Ngrids, BioIter)
#ifdef ANA_BIOLOGY
CASE ('BioIni(iNO3_)')
Npts=load_r(Nval, Rval, Ngrids, BioIni(iNO3_,:))
CASE ('BioIni(iPhyt)')
Npts=load_r(Nval, Rval, Ngrids, BioIni(iPhyt,:))
CASE ('BioIni(iZoop)')
Npts=load_r(Nval, Rval, Ngrids, BioIni(iZoop,:))
CASE ('BioIni(iSDet)')
Npts=load_r(Nval, Rval, Ngrids, BioIni(iSDet,:))
#endif
CASE ('PARfrac')
Npts=load_r(Nval, Rval, Ngrids, PARfrac)
CASE ('AttSW')
Npts=load_r(Nval, Rval, Ngrids, AttSW)
CASE ('AttPhy')
Npts=load_r(Nval, Rval, Ngrids, AttPhy)
CASE ('PhyIS')
Npts=load_r(Nval, Rval, Ngrids, PhyIS)
CASE ('Vm_NO3')
Npts=load_r(Nval, Rval, Ngrids, Vm_NO3)
CASE ('PhyMRD')
Npts=load_r(Nval, Rval, Ngrids, PhyMRD)
CASE ('PhyMRN')
Npts=load_r(Nval, Rval, Ngrids, PhyMRN)
CASE ('K_NO3')
Npts=load_r(Nval, Rval, Ngrids, K_NO3)
CASE ('Ivlev')
Npts=load_r(Nval, Rval, Ngrids, Ivlev)
CASE ('ZooGR')
Npts=load_r(Nval, Rval, Ngrids, ZooGR)
CASE ('ZooEED')
Npts=load_r(Nval, Rval, Ngrids, ZooEED)
CASE ('ZooEEN')
Npts=load_r(Nval, Rval, Ngrids, ZooEEN)
CASE ('ZooMRD')
Npts=load_r(Nval, Rval, Ngrids, ZooMRD)
CASE ('ZooMRN')
Npts=load_r(Nval, Rval, Ngrids, ZooMRN)
CASE ('DetRR')
Npts=load_r(Nval, Rval, Ngrids, DetRR)
CASE ('wPhy')
Npts=load_r(Nval, Rval, Ngrids, wPhy)
CASE ('wDet')
Npts=load_r(Nval, Rval, Ngrids, wDet)
CASE ('TNU2')
Npts=load_r(Nval, Rval, NBT, Ngrids, Rbio)
DO ng=1,Ngrids
DO itrc=1,NBT
i=idbio(itrc)
nl_tnu2(i,ng)=Rbio(itrc,ng)
END DO
END DO
CASE ('TNU4')
Npts=load_r(Nval, Rval, NBT, Ngrids, Rbio)
DO ng=1,Ngrids
DO itrc=1,NBT
i=idbio(itrc)
nl_tnu4(i,ng)=Rbio(itrc,ng)
END DO
END DO
CASE ('ad_TNU2')
Npts=load_r(Nval, Rval, NBT, Ngrids, Rbio)
DO ng=1,Ngrids
DO itrc=1,NBT
i=idbio(itrc)
ad_tnu2(i,ng)=Rbio(itrc,ng)
tl_tnu2(i,ng)=Rbio(itrc,ng)
END DO
END DO
CASE ('ad_TNU4')
Npts=load_r(Nval, Rval, NBT, Ngrids, Rbio)
DO ng=1,Ngrids
DO itrc=1,NBT
i=idbio(itrc)
ad_tnu4(i,ng)=Rbio(itrc,ng)
tl_tnu4(i,ng)=Rbio(itrc,ng)
END DO
END DO
CASE ('LtracerSponge')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO itrc=1,NBT
i=idbio(itrc)
LtracerSponge(i,ng)=Ltrc(itrc,ng)
END DO
END DO
CASE ('AKT_BAK')
Npts=load_r(Nval, Rval, NBT, Ngrids, Rbio)
DO ng=1,Ngrids
DO itrc=1,NBT
i=idbio(itrc)
Akt_bak(i,ng)=Rbio(itrc,ng)
END DO
END DO
CASE ('ad_AKT_fac')
Npts=load_r(Nval, Rval, NBT, Ngrids, Rbio)
DO ng=1,Ngrids
DO itrc=1,NBT
i=idbio(itrc)
ad_Akt_fac(i,ng)=Rbio(itrc,ng)
tl_Akt_fac(i,ng)=Rbio(itrc,ng)
END DO
END DO
CASE ('TNUDG')
Npts=load_r(Nval, Rval, NBT, Ngrids, Rbio)
DO ng=1,Ngrids
DO itrc=1,NBT
i=idbio(itrc)
Tnudg(i,ng)=Rbio(itrc,ng)
END DO
END DO
CASE ('Hadvection')
IF (itracer.lt.NBT) THEN
itracer=itracer+1
ELSE
itracer=1 ! next nested grid
END IF
itrc=idbio(itracer)
Npts=load_tadv(Nval, Cval, line, nline, itrc, igrid, &
& itracer, idbio(iTrcStr), idbio(iTrcEnd), &
& Vname(1,idTvar(itrc)), &
& Hadvection)
CASE ('Vadvection')
IF (itracer.lt.NBT) THEN
itracer=itracer+1
ELSE
itracer=1 ! next nested grid
END IF
itrc=idbio(itracer)
Npts=load_tadv(Nval, Cval, line, nline, itrc, igrid, &
& itracer, idbio(iTrcStr), idbio(iTrcEnd), &
& Vname(1,idTvar(itrc)), &
& Vadvection)
#if defined ADJOINT || defined TANGENT || defined TL_IOMS
CASE ('ad_Hadvection')
IF (itracer.lt.NBT) THEN
itracer=itracer+1
ELSE
itracer=1 ! next nested grid
END IF
itrc=idbio(itracer)
Npts=load_tadv(Nval, Cval, line, nline, itrc, igrid, &
& itracer, idbio(iTrcStr), idbio(iTrcEnd), &
& Vname(1,idTvar(itrc)), &
& ad_Hadvection)
CASE ('Vadvection')
IF (itracer.lt.(NBT) THEN
itracer=itracer+1
ELSE
itracer=1 ! next nested grid
END IF
itrc=idbio(itracer)
Npts=load_tadv(Nval, Cval, line, nline, itrc, igrid, &
& itracer, idbio(iTrcStr), idbio(iTrcEnd), &
& Vname(1,idTvar(itrc)), &
& ad_Vadvection)
#endif
CASE ('LBC(isTvar)')
IF (itracer.lt.NBT) THEN
itracer=itracer+1
ELSE
itracer=1 ! next nested grid
END IF
ifield=isTvar(idbio(itracer))
Npts=load_lbc(Nval, Cval, line, nline, ifield, igrid, &
& idbio(iTrcStr), idbio(iTrcEnd), &
& Vname(1,idTvar(idbio(itracer))), LBC)
#if defined ADJOINT || defined TANGENT || defined TL_IOMS
CASE ('ad_LBC(isTvar)')
IF (itracer.lt.NBT) THEN
itracer=itracer+1
ELSE
itracer=1 ! next nested grid
END IF
ifield=isTvar(idbio(itracer))
Npts=load_lbc(Nval, Cval, line, nline, ifield, igrid, &
& idbio(iTrcStr), idbio(iTrcEnd), &
& Vname(1,idTvar(idbio(itracer))), ad_LBC)
#endif
CASE ('LtracerSrc')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO itrc=1,NBT
i=idbio(itrc)
LtracerSrc(i,ng)=Ltrc(itrc,ng)
END DO
END DO
CASE ('LtracerCLM')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO itrc=1,NBT
i=idbio(itrc)
LtracerCLM(i,ng)=Ltrc(itrc,ng)
END DO
END DO
CASE ('LnudgeTCLM')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO itrc=1,NBT
i=idbio(itrc)
LnudgeTCLM(i,ng)=Ltrc(itrc,ng)
END DO
END DO
CASE ('Hout(idTvar)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO itrc=1,NBT
i=idTvar(idbio(itrc))
IF (i.eq.0) THEN
IF (Master) WRITE (out,30) &
& 'idTvar(idbio(', itrc, '))'
exit_flag=5
RETURN
END IF
Hout(i,ng)=Ltrc(itrc,ng)
END DO
END DO
CASE ('Hout(idTsur)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO itrc=1,NBT
i=idTsur(idbio(itrc))
IF (i.eq.0) THEN
IF (Master) WRITE (out,30) &
& 'idTsur(idbio(', itrc, '))'
exit_flag=5
RETURN
END IF
Hout(i,ng)=Ltrc(itrc,ng)
END DO
END DO
CASE ('Qout(idTvar)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO itrc=1,NBT
i=idTvar(idbio(itrc))
Qout(i,ng)=Ltrc(itrc,ng)
END DO
END DO
CASE ('Qout(idsurT)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO itrc=1,NBT
i=idsurT(idbio(itrc))
IF (i.eq.0) THEN
IF (Master) WRITE (out,30) &
& 'idsurT(idbio(', itrc, '))'
exit_flag=5
RETURN
END IF
Qout(i,ng)=Ltrc(itrc,ng)
END DO
END DO
CASE ('Qout(idTsur)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO itrc=1,NBT
i=idTsur(idbio(itrc))
Qout(i,ng)=Ltrc(itrc,ng)
END DO
END DO
#if defined AVERAGES || \
(defined AD_AVERAGES && defined ADJOINT) || \
(defined RP_AVERAGES && defined TL_IOMS) || \
(defined TL_AVERAGES && defined TANGENT)
CASE ('Aout(idTvar)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO itrc=1,NBT
i=idTvar(idbio(itrc))
Aout(i,ng)=Ltrc(itrc,ng)
END DO
END DO
CASE ('Aout(idTTav)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO itrc=1,NBT
i=idTTav(idbio(itrc))
Aout(i,ng)=Ltrc(itrc,ng)
END DO
END DO
CASE ('Aout(idUTav)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO itrc=1,NBT
i=idUTav(idbio(itrc))
Aout(i,ng)=Ltrc(itrc,ng)
END DO
END DO
CASE ('Aout(idVTav)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO itrc=1,NBT
i=idVTav(idbio(itrc))
Aout(i,ng)=Ltrc(itrc,ng)
END DO
END DO
CASE ('Aout(iHUTav)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO itrc=1,NBT
i=iHUTav(idbio(itrc))
Aout(i,ng)=Ltrc(itrc,ng)
END DO
END DO
CASE ('Aout(iHVTav)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO itrc=1,NBT
i=iHVTav(idbio(itrc))
Aout(i,ng)=Ltrc(itrc,ng)
END DO
END DO
#endif
#ifdef DIAGNOSTICS_TS
CASE ('Dout(iTrate)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO i=1,NBT
itrc=idbio(i)
Dout(idDtrc(itrc,iTrate),ng)=Ltrc(i,ng)
END DO
END DO
CASE ('Dout(iThadv)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO i=1,NBT
itrc=idbio(i)
Dout(idDtrc(itrc,iThadv),ng)=Ltrc(i,ng)
END DO
END DO
CASE ('Dout(iTxadv)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO i=1,NBT
itrc=idbio(i)
Dout(idDtrc(itrc,iTxadv),ng)=Ltrc(i,ng)
END DO
END DO
CASE ('Dout(iTyadv)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO i=1,NBT
itrc=idbio(i)
Dout(idDtrc(itrc,iTyadv),ng)=Ltrc(i,ng)
END DO
END DO
CASE ('Dout(iTvadv)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO i=1,NBT
itrc=idbio(i)
Dout(idDtrc(itrc,iTvadv),ng)=Ltrc(i,ng)
END DO
END DO
# if defined TS_DIF2 || defined TS_DIF4
CASE ('Dout(iThdif)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO i=1,NBT
itrc=idbio(i)
Dout(idDtrc(itrc,iThdif),ng)=Ltrc(i,ng)
END DO
END DO
CASE ('Dout(iTxdif)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO i=1,NBT
itrc=idbio(i)
Dout(idDtrc(itrc,iTxdif),ng)=Ltrc(i,ng)
END DO
END DO
CASE ('Dout(iTydif)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO i=1,NBT
itrc=idbio(i)
Dout(idDtrc(itrc,iTydif),ng)=Ltrc(i,ng)
END DO
END DO
# if defined MIX_GEO_TS || defined MIX_ISO_TS
CASE ('Dout(iTsdif)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO i=1,NBT
itrc=idbio(i)
Dout(idDtrc(itrc,iTsdif),ng)=Ltrc(i,ng)
END DO
END DO
# endif
# endif
CASE ('Dout(iTvdif)')
Npts=load_l(Nval, Cval, NBT, Ngrids, Ltrc)
DO ng=1,Ngrids
DO i=1,NBT
itrc=idbio(i)
Dout(idDtrc(itrc,iTvdif),ng)=Ltrc(i,ng)
END DO
END DO
#endif
END SELECT
END IF
END DO
10 IF (Master) WRITE (out,40) line
exit_flag=4
RETURN
20 CONTINUE
!
!-----------------------------------------------------------------------
! Report input parameters.
!-----------------------------------------------------------------------
!
IF (Master.and.Lwrite) THEN
DO ng=1,Ngrids
IF (Lbiology(ng)) THEN
WRITE (out,50) ng
WRITE (out,60) BioIter(ng), 'BioIter', &
& 'Number of iterations for nonlinear convergence.'
#ifdef ANA_BIOLOGY
WRITE (out,70) BioIni(iNO3_,ng), 'BioIni(iNO3_)', &
& 'Nitrate initial concentration (mmol/m3).'
WRITE (out,70) BioIni(iPhyt,ng), 'BioIni(iPhyt)', &
& 'Phytoplankton initial concentration (mmol/m3).'
WRITE (out,70) BioIni(iZoop,ng), 'BioIni(iZoop)', &
& 'Zooplankton initial concentration (mmol/m3).'
WRITE (out,70) BioIni(iSDet,ng), 'BioIni(iSDet)', &
& 'Small detritus initial concentration (mmol/m3).'
#endif
WRITE (out,80) PARfrac(ng), 'PARfrac', &
& 'Fraction of shortwave radiation that is', &
& 'photosynthetically active (nondimensional).'
WRITE (out,70) AttSW(ng), 'AttSW', &
& 'Light attenuation of seawater (m-1).'
WRITE (out,70) AttPhy(ng), 'AttPhy', &
& 'Light attenuation by phytoplankton (m2/mmole_N).'
WRITE (out,80) PhyIS(ng), 'PhyIS', &
& 'Phytoplankton growth, initial slope of P-I curve', &
& '(m2/W).'
WRITE (out,70) Vm_NO3(ng), 'Vm_NO3', &
& 'Nitrate upatake rate (day-1).'
WRITE (out,70) PhyMRD(ng), 'PhyMRD', &
& 'Phytoplankton mortality rate to Detritus (day-1)'
WRITE (out,70) PhyMRN(ng), 'PhyMRN', &
& 'Phytoplankton mortality rate to Nitrogen (day-1)'
WRITE (out,80) K_NO3(ng), 'K_NO3', &
& 'Inverse half-saturation for phytoplankton NO3', &
& 'uptake (1/(mmol m-3)).'
WRITE (out,80) Ivlev(ng), 'Ivlev', &
& 'Ivlev constant for zooplankton grazing', &
& '(nondimensional).'
WRITE (out,70) ZooGR(ng), 'ZooGR', &
& 'Zooplankton maximum growth rate (day-1).'
WRITE (out,80) ZooEED(ng), 'ZooEED', &
& 'Zooplankton excretion efficiency to Detritus', &
& 'pool (nondimensional).'
WRITE (out,80) ZooEEN(ng), 'ZooEEN', &
& 'Zooplankton excretion efficiency to Nitrogen', &
& 'pool (nondimensional).'
WRITE (out,70) ZooMRD(ng), 'ZooMRD', &
& 'Zooplankton mortality rate to Detritus (day-1).'
WRITE (out,70) ZooMRN(ng), 'ZooMRN', &
& 'Zooplankton mortality rate to Nitrogen (day-1).'
WRITE (out,70) DetRR(ng), 'DetRR', &
& 'Detritus remineralization rate (day-1).'
WRITE (out,70) wPhy(ng), 'wPhy', &
& 'Phytoplankton sinking rate (m/day).'
WRITE (out,70) wDet(ng), 'wDet', &
& 'Detrital sinking rate (m/day).'
#ifdef TS_DIF2
DO itrc=1,NBT
i=idbio(itrc)
WRITE (out,90) nl_tnu2(i,ng), 'nl_tnu2', i, &
& 'NLM Horizontal, harmonic mixing coefficient', &
& '(m2/s) for tracer ', i, TRIM(Vname(1,idTvar(i)))
# ifdef ADJOINT
WRITE (out,90) ad_tnu2(i,ng), 'ad_tnu2', i, &
& 'ADM Horizontal, harmonic mixing coefficient', &
& '(m2/s) for tracer ', i, TRIM(Vname(1,idTvar(i)))
# endif
# if defined TANGENT || defined TL_IOMS
WRITE (out,90) tl_tnu2(i,ng), 'tl_tnu2', i, &
& 'TLM Horizontal, harmonic mixing coefficient', &
& '(m2/s) for tracer ', i, TRIM(Vname(1,idTvar(i)))
# endif
END DO
#endif
#ifdef TS_DIF4
DO itrc=1,NBT
i=idbio(itrc)
WRITE (out,90) nl_tnu4(i,ng), 'nl_tnu4', i, &
& 'NLM Horizontal, biharmonic mixing coefficient', &
& '(m4/s) for tracer ', i, TRIM(Vname(1,idTvar(i)))
# ifdef ADJOINT
WRITE (out,90) ad_tnu4(i,ng), 'ad_tnu4', i, &
& 'ADM Horizontal, biharmonic mixing coefficient', &
& '(m4/s) for tracer ', i, TRIM(Vname(1,idTvar(i)))
# endif
# if defined TANGENT || defined TL_IOMS
WRITE (out,90) tl_tnu4(i,ng), 'tl_tnu4', i, &
& 'TLM Horizontal, biharmonic mixing coefficient', &
& '(m4/s) for tracer ', i, TRIM(Vname(1,idTvar(i)))
# endif
END DO
#endif
DO itrc=1,NBT
i=idbio(itrc)
IF (LtracerSponge(i,ng)) THEN
WRITE (out,100) LtracerSponge(i,ng), 'LtracerSponge', &
& i, 'Turning ON sponge on tracer ', i, &
& TRIM(Vname(1,idTvar(i)))
ELSE
WRITE (out,100) LtracerSponge(i,ng), 'LtracerSponge', &
& i, 'Turning OFF sponge on tracer ', i, &
& TRIM(Vname(1,idTvar(i)))
END IF
END DO
DO itrc=1,NBT
i=idbio(itrc)
WRITE(out,90) Akt_bak(i,ng), 'Akt_bak', i, &
& 'Background vertical mixing coefficient (m2/s)', &
& 'for tracer ', i, TRIM(Vname(1,idTvar(i)))
END DO
#ifdef FORWARD_MIXING
DO itrc=1,NBT
i=idbio(itrc)
# ifdef ADJOINT
WRITE (out,90) ad_Akt_fac(i,ng), 'ad_Akt_fac', i, &
& 'ADM basic state vertical mixing scale factor', &
& 'for tracer ', i, TRIM(Vname(1,idTvar(i)))
# endif
# if defined TANGENT || defined TL_IOMS
WRITE (out,90) tl_Akt_fac(i,ng), 'tl_Akt_fac', i, &
& 'TLM basic state vertical mixing scale factor', &
& 'for tracer ', i, TRIM(Vname(1,idTvar(i)))
# endif
END DO
#endif
DO itrc=1,NBT
i=idbio(itrc)
WRITE (out,90) Tnudg(i,ng), 'Tnudg', i, &
& 'Nudging/relaxation time scale (days)', &
& 'for tracer ', i, TRIM(Vname(1,idTvar(i)))
END DO
DO itrc=1,NBT
i=idbio(itrc)
IF (LtracerSrc(i,ng)) THEN
WRITE (out,100) LtracerSrc(i,ng), 'LtracerSrc', &
& i, 'Turning ON point sources/Sink on tracer ', i, &
& TRIM(Vname(1,idTvar(i)))
ELSE
WRITE (out,100) LtracerSrc(i,ng), 'LtracerSrc', &
& i, 'Turning OFF point sources/Sink on tracer ', i, &
& TRIM(Vname(1,idTvar(i)))
END IF
END DO
DO itrc=1,NBT
i=idbio(itrc)
IF (LtracerCLM(i,ng)) THEN
WRITE (out,100) LtracerCLM(i,ng), 'LtracerCLM', i, &
& 'Turning ON processing of climatology tracer ', i, &
& TRIM(Vname(1,idTvar(i)))
ELSE
WRITE (out,100) LtracerCLM(i,ng), 'LtracerCLM', i, &
& 'Turning OFF processing of climatology tracer ', i, &
& TRIM(Vname(1,idTvar(i)))
END IF
END DO
DO itrc=1,NBT
i=idbio(itrc)
IF (LnudgeTCLM(i,ng)) THEN
WRITE (out,100) LnudgeTCLM(i,ng), 'LnudgeTCLM', i, &
& 'Turning ON nudging of climatology tracer ', i, &
& TRIM(Vname(1,idTvar(i)))
ELSE
WRITE (out,100) LnudgeTCLM(i,ng), 'LnudgeTCLM', i, &
& 'Turning OFF nudging of climatology tracer ', i, &
& TRIM(Vname(1,idTvar(i)))
END IF
END DO
IF ((nHIS(ng).gt.0).and.ANY(Hout(:,ng))) THEN
WRITE (out,'(1x)')
DO itrc=1,NBT
i=idbio(itrc)
IF (Hout(idTvar(i),ng)) WRITE (out,110) &
& Hout(idTvar(i),ng), 'Hout(idTvar)', &
& 'Write out tracer ', i, TRIM(Vname(1,idTvar(i)))
END DO
DO itrc=1,NBT
i=idbio(itrc)
IF (Hout(idTsur(i),ng)) WRITE (out,110) &
& Hout(idTsur(i),ng), 'Hout(idTsur)', &
& 'Write out tracer flux ', i, &
& TRIM(Vname(1,idTvar(i)))
END DO
END IF
IF ((nQCK(ng).gt.0).and.ANY(Qout(:,ng))) THEN
WRITE (out,'(1x)')
DO itrc=1,NBT
i=idbio(itrc)
IF (Qout(idTvar(i),ng)) WRITE (out,110) &
& Qout(idTvar(i),ng), 'Qout(idTvar)', &
& 'Write out tracer ', i, TRIM(Vname(1,idTvar(i)))
END DO
DO itrc=1,NBT
i=idbio(itrc)
IF (Qout(idsurT(i),ng)) WRITE (out,110) &
& Qout(idsurT(i),ng), 'Qout(idsurT)', &
& 'Write out surface tracer ', i, &
& TRIM(Vname(1,idTvar(i)))
END DO
DO itrc=1,NBT
i=idbio(itrc)
IF (Qout(idTsur(i),ng)) WRITE (out,110) &
& Qout(idTsur(i),ng), 'Qout(idTsur)', &
& 'Write out tracer flux ', i, &
& TRIM(Vname(1,idTvar(i)))
END DO
END IF
#if defined AVERAGES || \
(defined AD_AVERAGES && defined ADJOINT) || \
(defined RP_AVERAGES && defined TL_IOMS) || \
(defined TL_AVERAGES && defined TANGENT)
IF ((nAVG(ng).gt.0).and.ANY(Aout(:,ng))) THEN
WRITE (out,'(1x)')
DO itrc=1,NBT
i=idbio(itrc)
IF (Aout(idTvar(i),ng)) WRITE (out,110) &
& Aout(idTvar(i),ng), 'Aout(idTvar)', &
& 'Write out averaged tracer ', i, &
& TRIM(Vname(1,idTvar(i)))
END DO
DO itrc=1,NBT
i=idbio(itrc)
IF (Aout(idTTav(i),ng)) WRITE (out,110) &
& Aout(idTTav(i),ng), 'Aout(idTTav)', &
& 'Write out averaged <t*t> for tracer ', i, &
& TRIM(Vname(1,idTvar(i)))
END DO
DO itrc=1,NBT
i=idbio(itrc)
IF (Aout(idUTav(i),ng)) WRITE (out,110) &
& Aout(idUTav(i),ng), 'Aout(idUTav)', &
& 'Write out averaged <u*t> for tracer ', i, &
& TRIM(Vname(1,idTvar(i)))
END DO
DO itrc=1,NBT
i=idbio(itrc)
IF (Aout(idVTav(i),ng)) WRITE (out,110) &
& Aout(idVTav(i),ng), 'Aout(idVTav)', &
& 'Write out averaged <v*t> for tracer ', i, &
& TRIM(Vname(1,idTvar(i)))
END DO
DO itrc=1,NBT
i=idbio(itrc)
IF (Aout(iHUTav(i),ng)) WRITE (out,110) &
& Aout(iHUTav(i),ng), 'Aout(iHUTav)', &
& 'Write out averaged <Huon*t> for tracer ', i, &
& TRIM(Vname(1,idTvar(i)))
END DO
DO itrc=1,NBT
i=idbio(itrc)
IF (Aout(iHVTav(i),ng)) WRITE (out,110) &
& Aout(iHVTav(i),ng), 'Aout(iHVTav)', &
& 'Write out averaged <Hvom*t> for tracer ', i, &
& TRIM(Vname(1,idTvar(i)))
END DO
END IF
#endif
#ifdef DIAGNOSTICS_TS
IF ((nDIA(ng).gt.0).and.ANY(Dout(:,ng))) THEN
WRITE (out,'(1x)')
DO i=1,NBT
itrc=idbio(i)
IF (Dout(idDtrc(itrc,iTrate),ng)) &
& WRITE (out,110) .TRUE., 'Dout(iTrate)', &
& 'Write out rate of change of tracer ', itrc, &
& TRIM(Vname(1,idTvar(itrc)))
END DO
DO i=1,NBT
itrc=idbio(i)
IF (Dout(idDtrc(itrc,iThadv),ng)) &
& WRITE (out,110) .TRUE., 'Dout(iThadv)', &
& 'Write out horizontal advection, tracer ', itrc, &
& TRIM(Vname(1,idTvar(itrc)))
END DO
DO i=1,NBT
itrc=idbio(i)
IF (Dout(idDtrc(itrc,iTxadv),ng)) &
& WRITE (out,110) .TRUE., 'Dout(iTxadv)', &
& 'Write out horizontal X-advection, tracer ', itrc, &
& TRIM(Vname(1,idTvar(itrc)))
END DO
DO i=1,NBT
itrc=idbio(i)
IF (Dout(idDtrc(itrc,iTyadv),ng)) &
& WRITE (out,110) .TRUE., 'Dout(iTyadv)', &
& 'Write out horizontal Y-advection, tracer ', itrc, &
& TRIM(Vname(1,idTvar(itrc)))
END DO
DO i=1,NBT
itrc=idbio(i)
IF (Dout(idDtrc(itrc,iTvadv),ng)) &
& WRITE (out,110) .TRUE., 'Dout(iTvadv)', &
& 'Write out vertical advection, tracer ', itrc, &
& TRIM(Vname(1,idTvar(itrc)))
END DO
# if defined TS_DIF2 || defined TS_DIF4
DO i=1,NBT
itrc=idbio(i)
IF (Dout(idDtrc(itrc,iThdif),ng)) &
& WRITE (out,110) .TRUE., 'Dout(iThdif)', &
& 'Write out horizontal diffusion, tracer ', itrc, &
& TRIM(Vname(1,idTvar(itrc)))
END DO
DO i=1,NBT
itrc=idbio(i)
IF (Dout(idDtrc(i,iTxdif),ng)) &
& WRITE (out,110) .TRUE., 'Dout(iTxdif)', &
& 'Write out horizontal X-diffusion, tracer ', itrc, &
& TRIM(Vname(1,idTvar(itrc)))
END DO
DO i=1,NBT
itrc=idbio(i)
IF (Dout(idDtrc(itrc,iTydif),ng)) &
& WRITE (out,110) .TRUE., 'Dout(iTydif)', &
& 'Write out horizontal Y-diffusion, tracer ', itrc, &
& TRIM(Vname(1,idTvar(itrc)))
END DO
# if defined MIX_GEO_TS || defined MIX_ISO_TS
DO i=1,NBT
itrc=idbio(i)
IF (Dout(idDtrc(itrc,iTsdif),ng)) &
& WRITE (out,110) .TRUE., 'Dout(iTsdif)', &
& 'Write out horizontal S-diffusion, tracer ', itrc, &
& TRIM(Vname(1,idTvar(itrc)))
END DO
# endif
# endif
DO i=1,NBT
itrc=idbio(i)
IF (Dout(idDtrc(itrc,iTvdif),ng)) &
& WRITE (out,110) .TRUE., 'Dout(iTvdif)', &
& 'Write out vertical diffusion, tracer ', itrc, &
& TRIM(Vname(1,idTvar(itrc)))
END DO
END IF
#endif
END IF
END DO
END IF
!
!-----------------------------------------------------------------------
! Rescale biological tracer parameters.
!-----------------------------------------------------------------------
!
! Take the square root of the biharmonic coefficients so it can
! be applied to each harmonic operator.
!
DO ng=1,Ngrids
DO itrc=1,NBT
i=idbio(itrc)
nl_tnu4(i,ng)=SQRT(ABS(nl_tnu4(i,ng)))
#ifdef ADJOINT
ad_tnu4(i,ng)=SQRT(ABS(ad_tnu4(i,ng)))
#endif
#if defined TANGENT || defined TL_IOMS
tl_tnu4(i,ng)=SQRT(ABS(tl_tnu4(i,ng)))
#endif
!
! Compute inverse nudging coefficients (1/s) used in various tasks.
!
IF (Tnudg(i,ng).gt.0.0_r8) THEN
Tnudg(i,ng)=1.0_r8/(Tnudg(i,ng)*86400.0_r8)
ELSE
Tnudg(i,ng)=0.0_r8
END IF
END DO
END DO
30 FORMAT (/,' read_BioPar - variable info not yet loaded, ', &
& a,i2.2,a)
40 FORMAT (/,' read_BioPar - Error while processing line: ',/,a)
50 FORMAT (/,/,' NPZD Model Parameters, Grid: ',i2.2, &
& /, ' ===============================',/)
60 FORMAT (1x,i10,2x,a,t32,a)
70 FORMAT (1p,e11.4,2x,a,t32,a)
80 FORMAT (1p,e11.4,2x,a,t32,a,/,t34,a)
90 FORMAT (1p,e11.4,2x,a,'(',i2.2,')',t32,a,/,t34,a,i2.2,':',1x,a)
100 FORMAT (10x,l1,2x,a,'(',i2.2,')',t32,a,i2.2,':',1x,a)
110 FORMAT (10x,l1,2x,a,t32,a,i2.2,':',1x,a)
RETURN
END SUBROUTINE read_BioPar