#include "cppdefs.h" #if defined NONLINEAR && defined BIOLOGY /* ** svn $Is$ ************************************************************************ ** ** ** The current design allows the user to have a lot of latitude for ** ** customizing or adding any particular ecosystem model. ** ** ** ** Each ecosystem model is composed of seven files: ** ** ** ** (1) Model source and sink discretized equations: ** ** ** ** ecosim.h ECOSIM ** ** fennel.h BIO_FENNEL ** ** hypoxia_srm.h HYPOXIA_SRM ** ** nemuro.h NEMURO ** ** npzd_Franks.h NPZD_FRANKS ** ** npzd_iron.h NPZD_IRON ** ** npzd_Powell.h NPZD_POWELL ** ** red_tide.h RED_TIDE ** ** ** ** (2) Internal model parameters declaration: ** ** ** ** ecosim_mod.h ** ** fennel_mod.h ** ** hypoxia_srm_mod.h ** ** nemuro_mod.h ** ** npzd_Franks_mod.h ** ** npzd_iron_mod.h ** ** npzd_Powell_mod.h ** ** red_tide_mod.h ** ** ** ** (3) Model parameters standard input script: ** ** ** ** ecosim.in ** ** bio_Fennel.in ** ** hypoxia_srm.in ** ** nemuro.in ** ** npzd_Franks.in ** ** npzd_iron.in ** ** npzd_Powell.in ** ** red_tide.in ** ** ** ** (4) Code to read input model parameters: ** ** ** ** ecosim_inp.h ** ** fennel_inp.h ** ** hypoxia_srm_inp.h ** ** nemuro_inp.h ** ** npzd_Franks_inp.h ** ** npzd_iron_inp.h ** ** npzd_Powell_inp.h ** ** red_tide_inp.h ** ** ** ** (5) Code to assign indices to model variables during the ** ** reading of metadata information from "varinfo.yaml": ** ** ** ** ecosim_var.h ** ** fennel_var.h ** ** hypoxia_srm_var.h ** ** nemuro_var.h ** ** npzd_Franks_var.h ** ** npzd_iron_var.h ** ** npzd_Powell_var.h ** ** red_tide_var.h ** ** ** ** (6) Code to define input model parameters in all output ** ** NetCDF files: ** ** ** ** ecosim_def.h ** ** fennel_def.h ** ** hypoxia_srm_def.h ** ** nemuro_def.h ** ** npzd_Franks_def.h ** ** npzd_iron_def.h ** ** npzd_Powell_def.h ** ** red_tide_def.h ** ** ** ** (7) Code to write out input model parameters in all output ** ** NetCDF files: ** ** ** ** ecosim_wrt.h ** ** fennel_wrt.h ** ** hypoxia_srm_wrt.h ** ** nemuro_wrt.h ** ** npzd_Franks_wrt.h ** ** npzd_iron_wrt.h ** ** npzd_Powell_wrt.h ** ** red_tide_wrt.h ** ** ** ** ** ** Note that all the *.h files are located in ROMS/Nonlinear/Biology ** ** and included within <...> to allow the user to customize any of ** ** them in the project directory while keeping the distributed code ** ** intact (check the build script for details). ** ** ** ************************************************************************ */ # if defined BIO_FENNEL # include <fennel.h> # elif defined ECOSIM # include <ecosim.h> # elif defined HYPOXIA_SRM # include <hypoxia_srm.h> # elif defined NEMURO # include <nemuro.h> # elif defined NPZD_FRANKS # include <npzd_Franks.h> # elif defined NPZD_IRON # include <npzd_iron.h> # elif defined NPZD_POWELL # include <npzd_Powell.h> # elif defined RED_TIDE # include <red_tide.h> # endif #else MODULE biology_mod END MODULE biology_mod #endif