# Doxyfile 1.9.3 DOXYFILE_ENCODING = UTF-8 PROJECT_NAME = "CCPP SciDoc" PROJECT_NUMBER = "v6.0.0" PROJECT_BRIEF = "Common Community Physics Package Developed at DTC" PROJECT_LOGO = img/dtc_logo.png OUTPUT_DIRECTORY = doc CREATE_SUBDIRS = NO ALLOW_UNICODE_NAMES = NO OUTPUT_LANGUAGE = English BRIEF_MEMBER_DESC = YES REPEAT_BRIEF = NO ABBREVIATE_BRIEF = ALWAYS_DETAILED_SEC = NO INLINE_INHERITED_MEMB = NO FULL_PATH_NAMES = NO STRIP_FROM_PATH = STRIP_FROM_INC_PATH = SHORT_NAMES = NO JAVADOC_AUTOBRIEF = NO JAVADOC_BANNER = NO QT_AUTOBRIEF = NO MULTILINE_CPP_IS_BRIEF = NO PYTHON_DOCSTRING = YES INHERIT_DOCS = YES SEPARATE_MEMBER_PAGES = YES TAB_SIZE = 4 ALIASES = OPTIMIZE_OUTPUT_FOR_C = NO OPTIMIZE_OUTPUT_JAVA = NO OPTIMIZE_FOR_FORTRAN = YES OPTIMIZE_OUTPUT_VHDL = NO OPTIMIZE_OUTPUT_SLICE = NO EXTENSION_MAPPING = .f=FortranFree \ .F=FortranFree \ .F90=FortranFree \ .f90=FortranFree MARKDOWN_SUPPORT = YES TOC_INCLUDE_HEADINGS = 5 AUTOLINK_SUPPORT = YES BUILTIN_STL_SUPPORT = NO CPP_CLI_SUPPORT = NO SIP_SUPPORT = NO IDL_PROPERTY_SUPPORT = YES DISTRIBUTE_GROUP_DOC = YES GROUP_NESTED_COMPOUNDS = NO SUBGROUPING = YES INLINE_GROUPED_CLASSES = NO INLINE_SIMPLE_STRUCTS = NO TYPEDEF_HIDES_STRUCT = YES LOOKUP_CACHE_SIZE = 0 NUM_PROC_THREADS = 1 #--------------------------------------------------------------------------- # Build related configuration options #--------------------------------------------------------------------------- EXTRACT_ALL = YES EXTRACT_PRIVATE = YES EXTRACT_PRIV_VIRTUAL = NO EXTRACT_PACKAGE = YES EXTRACT_STATIC = YES EXTRACT_LOCAL_CLASSES = YES EXTRACT_LOCAL_METHODS = YES EXTRACT_ANON_NSPACES = YES RESOLVE_UNNAMED_PARAMS = YES HIDE_UNDOC_MEMBERS = NO HIDE_UNDOC_CLASSES = NO HIDE_FRIEND_COMPOUNDS = NO HIDE_IN_BODY_DOCS = NO INTERNAL_DOCS = YES CASE_SENSE_NAMES = NO HIDE_SCOPE_NAMES = NO HIDE_COMPOUND_REFERENCE= NO SHOW_HEADERFILE = YES SHOW_INCLUDE_FILES = NO SHOW_GROUPED_MEMB_INC = NO FORCE_LOCAL_INCLUDES = NO INLINE_INFO = YES SORT_MEMBER_DOCS = NO SORT_BRIEF_DOCS = NO SORT_MEMBERS_CTORS_1ST = NO SORT_GROUP_NAMES = NO SORT_BY_SCOPE_NAME = NO STRICT_PROTO_MATCHING = NO GENERATE_TODOLIST = YES GENERATE_TESTLIST = YES GENERATE_BUGLIST = YES GENERATE_DEPRECATEDLIST= YES ENABLED_SECTIONS = YES MAX_INITIALIZER_LINES = 30 SHOW_USED_FILES = NO SHOW_FILES = NO SHOW_NAMESPACES = YES FILE_VERSION_FILTER = LAYOUT_FILE = ccpp_dox_layout.xml CITE_BIB_FILES = library.bib #--------------------------------------------------------------------------- # Configuration options related to warning and progress messages #--------------------------------------------------------------------------- QUIET = NO WARNINGS = YES WARN_IF_UNDOCUMENTED = NO WARN_IF_DOC_ERROR = YES WARN_IF_INCOMPLETE_DOC = YES WARN_NO_PARAMDOC = NO WARN_AS_ERROR = NO WARN_FORMAT = WARN_LOGFILE = #--------------------------------------------------------------------------- # Configuration options related to the input files #--------------------------------------------------------------------------- INPUT = pdftxt/mainpage.txt \ pdftxt/all_shemes_list.txt \ pdftxt/GFS_v16_suite.txt \ pdftxt/GFS_v17_p8_suite.txt \ pdftxt/RAP_suite.txt \ pdftxt/HRRR_suite.txt \ pdftxt/RE6/FV3_HRRR_input.nml \ pdftxt/RRFS_v1beta_suite.txt \ pdftxt/WoFS_v0_suite.txt \ pdftxt/RRFS_SGSCLOUD.txt \ pdftxt/GFS_RRTMG.txt \ pdftxt/GFS_SFCLYR.txt \ pdftxt/MYNN_SFCLAYER.txt \ pdftxt/GFS_NSST.txt \ pdftxt/GFS_OCEAN.txt \ pdftxt/GFS_NOAH.txt \ pdftxt/GFS_SFCSICE.txt \ pdftxt/GFS_SATMEDMFVDIFQ.txt \ pdftxt/GFS_NOAHMP.txt \ pdftxt/GFS_UGWPv0.txt \ pdftxt/GFS_unified_ugwp.txt \ pdftxt/GFS_drag_suite.txt \ pdftxt/GFS_GWDPS.txt \ pdftxt/GFS_OZPHYS.txt \ pdftxt/GFS_H2OPHYS.txt \ pdftxt/GFS_SAMFdeep.txt \ pdftxt/GFS_SAMFshal.txt \ pdftxt/GFDL_cloud.txt \ pdftxt/NSSLMICRO.txt \ pdftxt/MYNN_EDMF.txt \ pdftxt/CU_GF_deep.txt \ pdftxt/RUCLSM.txt \ pdftxt/THOMPSON.txt \ pdftxt/suite_input.nml.txt \ pdftxt/GFS_SPP.txt \ ../fv_sat_adj.F90 \ ../GFS_time_vary_pre.fv3.F90 \ ../GFS_rad_time_vary.fv3.F90 \ ../GFS_phys_time_vary.fv3.F90 \ ../get_prs_fv3.F90 \ ../get_phi_fv3.F90 \ ../ozne_def.f \ ../ozinterp.f90 \ ../h2o_def.f \ ../h2ointerp.f90 \ ../aerclm_def.F \ ../aerinterp.F90 \ ../iccn_def.F \ ../iccninterp.F90 \ ../sfcsub.F \ ../gcycle.F90 \ ../GFS_suite_interstitial_1.F90 \ ../GFS_suite_interstitial_2.F90 \ ../GFS_suite_interstitial_3.F90 \ ../GFS_suite_interstitial_4.F90 \ ../GFS_suite_interstitial_5.F90 \ ../GFS_suite_interstitial_phys_reset.F90 \ ../GFS_suite_interstitial_rad_reset.F90 \ ../GFS_suite_stateout_reset.F90 \ ../GFS_suite_stateout_update.F90 \ ../GFS_surface_composites_inter.F90 \ ../GFS_surface_composites_pre.F90 \ ../GFS_surface_composites_post.F90 \ ../GFS_surface_loop_control_part1.F90 \ ../GFS_surface_loop_control_part2.F90 \ ../GFS_radiation_surface.F90 \ ../GFS_rrtmg_pre.F90 \ ../GFS_rrtmg_post.F90 \ ../GFS_rrtmg_setup.F90 \ ../rad_sw_pre.F90 \ ../sgscloud_radpre.F90 \ ../sgscloud_radpost.F90 \ ../radsw_main.F90 \ ../rrtmg_sw_post.F90 \ ../rrtmg_lw_pre.F90 \ ../radlw_main.F90 \ ../rrtmg_lw_post.F90 \ ../radiation_aerosols.f \ ../radiation_astronomy.f \ ../radiation_clouds.f \ ../radiation_cloud_overlap.F90 \ ../radiation_gases.f \ ../radiation_surface.f \ ../radlw_param.f \ ../radlw_datatb.f \ ../radsw_param.f \ ../radsw_datatb.f \ ../GFS_cloud_diagnostics.F90 \ ../dcyc2t3.f \ ../sfc_diff.f \ ../sfc_diag.f \ ../sfc_diag_post.F90 \ ../sfc_nst.f \ ../sfc_nst_pre.f \ ../sfc_nst_post.f \ ../sfc_ocean.F \ ../module_nst_model.f90 \ ../module_nst_parameters.f90 \ ../module_nst_water_prop.f90 \ ../lsm_noah.f \ ../sflx.f \ ../namelist_soilveg.f \ ../set_soilveg.f \ ../noahmpdrv.F90 \ ../module_sf_noahmplsm.f90 \ ../module_sf_noahmp_glacier.f90 \ ../noahmp_tables.f90 \ ../GFS_surface_generic_pre.F90 \ ../GFS_surface_generic_post.F90 \ ../surface_perturbation.F90 \ ../GFS_DCNV_generic_pre.F90 \ ../GFS_DCNV_generic_post.F90 \ ../GFS_SCNV_generic_pre.F90 \ ../GFS_SCNV_generic_post.F90 \ ../sfc_sice.f \ ../satmedmfvdifq.F \ ../mfpbltq.f \ ../mfscuq.f \ ../tridi.f \ ../GFS_GWD_generic_pre.F90 \ ../GFS_GWD_generic_post.F90 \ ../unified_ugwp.F90 \ ../drag_suite.F90 \ ../cires_tauamf_data.F90 \ ../cires_orowam2017.f \ ../cires_ugwp.F90 \ ../cires_ugwp_initialize.F90 \ ../cires_ugwp_module.F90 \ ../cires_ugwp_post.F90 \ ../cires_ugwp_triggers.F90 \ ../cires_ugwp_module.F90 \ ../gwdps.f \ ../ugwp_driver_v0.F \ ../ozphys_2015.f \ ../h2ophys.f \ ../samfdeepcnv.f \ ../samfshalcnv.f \ ../cnvc90.f \ ../module_bfmicrophysics.f \ ../gfdl_cloud_microphys.F90 \ ../module_gfdl_cloud_microphys.F90 \ ../GFS_MP_generic_pre.F90 \ ../GFS_MP_generic_post.F90 \ ../GFS_PBL_generic_common.F90 \ ../GFS_PBL_generic_pre.F90 \ ../GFS_PBL_generic_post.F90 \ ../calpreciptype.f90 \ ../GFS_stochastics.F90 \ ../cu_gf_driver.F90 \ ../cu_gf_driver_pre.F90 \ ../cu_gf_deep.F90 \ ../cu_gf_sh.F90 \ ../cu_gf_driver_post.F90 \ ../mynnedmf_wrapper.F90 \ ../module_bl_mynn.F90 \ ../mynnsfc_wrapper.F90 \ ../module_sf_mynn.F90 \ ../lsm_ruc.F90 \ ../module_sf_ruclsm.F90 \ ../namelist_soilveg_ruc.F90 \ ../set_soilveg_ruc.F90 \ ../module_soil_pre.F90 \ ../mp_thompson_pre.F90 \ ../module_mp_thompson_make_number_concentrations.F90 \ ../mp_thompson.F90 \ ../module_mp_thompson.F90 \ ../module_mp_radar.F90 \ ../mp_thompson_post.F90 \ ../mp_nssl.F90 \ ../module_mp_nssl_2mom.F90 \ ../funcphys.f90 \ ../physparam.f \ ../physcons.F90 \ ../radcons.f90 \ ../mersenne_twister.f \ ../maximum_hourly_diagnostics.F90 \ ../phys_tend.F90 INPUT_ENCODING = UTF-8 FILE_PATTERNS = *.f \ *.F \ *.F90 \ *.f90 \ *.nml \ *.txt RECURSIVE = YES EXCLUDE = EXCLUDE_SYMLINKS = NO EXCLUDE_PATTERNS = EXCLUDE_SYMBOLS = EXAMPLE_PATH = pdftxt/RE6 \ doc/html EXAMPLE_PATTERNS = EXAMPLE_RECURSIVE = NO IMAGE_PATH = img INPUT_FILTER = FILTER_PATTERNS = FILTER_SOURCE_FILES = NO FILTER_SOURCE_PATTERNS = USE_MDFILE_AS_MAINPAGE = #--------------------------------------------------------------------------- # Configuration options related to source browsing #--------------------------------------------------------------------------- SOURCE_BROWSER = NO INLINE_SOURCES = NO STRIP_CODE_COMMENTS = YES REFERENCED_BY_RELATION = YES REFERENCES_RELATION = YES REFERENCES_LINK_SOURCE = YES SOURCE_TOOLTIPS = YES USE_HTAGS = NO VERBATIM_HEADERS = YES CLANG_ASSISTED_PARSING = NO CLANG_ADD_INC_PATHS = YES CLANG_OPTIONS = CLANG_DATABASE_PATH = #--------------------------------------------------------------------------- # Configuration options related to the alphabetical class index #--------------------------------------------------------------------------- ALPHABETICAL_INDEX = NO IGNORE_PREFIX = #--------------------------------------------------------------------------- # Configuration options related to the HTML output #--------------------------------------------------------------------------- GENERATE_HTML = YES HTML_OUTPUT = html HTML_FILE_EXTENSION = .html HTML_HEADER = _doxygen/header.html HTML_FOOTER = _doxygen/footer.html HTML_STYLESHEET = HTML_EXTRA_STYLESHEET = _doxygen/doxygen-awesome.css \ _doxygen/doxygen-awesome-sidebar-only.css \ _doxygen/doxygen-awesome-sidebar-only-darkmode-toggle.css \ _doxygen/doxygen-awesome-ccpp.css HTML_EXTRA_FILES = _doxygen/doxygen-awesome-darkmode-toggle.js \ _doxygen/doxygen-awesome-ccpp.js HTML_COLORSTYLE_HUE = 209 HTML_COLORSTYLE_SAT = 255 HTML_COLORSTYLE_GAMMA = 113 HTML_TIMESTAMP = NO HTML_DYNAMIC_MENUS = YES HTML_DYNAMIC_SECTIONS = NO HTML_INDEX_NUM_ENTRIES = 100 GENERATE_DOCSET = NO DOCSET_FEEDNAME = "Doxygen generated docs" DOCSET_FEEDURL = DOCSET_BUNDLE_ID = org.doxygen.Project DOCSET_PUBLISHER_ID = org.doxygen.Publisher DOCSET_PUBLISHER_NAME = Publisher GENERATE_HTMLHELP = NO CHM_FILE = HHC_LOCATION = GENERATE_CHI = NO CHM_INDEX_ENCODING = BINARY_TOC = NO TOC_EXPAND = NO GENERATE_QHP = NO QCH_FILE = QHP_NAMESPACE = org.doxygen.Project QHP_VIRTUAL_FOLDER = doc QHP_CUST_FILTER_NAME = QHP_CUST_FILTER_ATTRS = QHP_SECT_FILTER_ATTRS = QHG_LOCATION = GENERATE_ECLIPSEHELP = NO ECLIPSE_DOC_ID = org.doxygen.Project DISABLE_INDEX = YES GENERATE_TREEVIEW = YES FULL_SIDEBAR = NO ENUM_VALUES_PER_LINE = 4 TREEVIEW_WIDTH = 335 EXT_LINKS_IN_WINDOW = NO OBFUSCATE_EMAILS = YES HTML_FORMULA_FORMAT = SVG FORMULA_FONTSIZE = 10 FORMULA_TRANSPARENT = YES FORMULA_MACROFILE = USE_MATHJAX = YES MATHJAX_VERSION = MathJax_2 MATHJAX_FORMAT = HTML-CSS #MATHJAX_RELPATH = https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.2 MATHJAX_RELPATH = https://cdn.jsdelivr.net/npm/mathjax@2 MATHJAX_EXTENSIONS = MATHJAX_CODEFILE = SEARCHENGINE = YES SERVER_BASED_SEARCH = NO EXTERNAL_SEARCH = NO SEARCHENGINE_URL = SEARCHDATA_FILE = searchdata.xml EXTERNAL_SEARCH_ID = EXTRA_SEARCH_MAPPINGS = #--------------------------------------------------------------------------- # Configuration options related to the LaTeX output #--------------------------------------------------------------------------- GENERATE_LATEX = YES LATEX_OUTPUT = latex LATEX_CMD_NAME = latex MAKEINDEX_CMD_NAME = makeindex LATEX_MAKEINDEX_CMD = makeindex COMPACT_LATEX = YES PAPER_TYPE = a4 EXTRA_PACKAGES = amsmath LATEX_HEADER = LATEX_FOOTER = LATEX_EXTRA_STYLESHEET = LATEX_EXTRA_FILES = PDF_HYPERLINKS = YES USE_PDFLATEX = YES LATEX_BATCHMODE = NO LATEX_HIDE_INDICES = YES LATEX_BIB_STYLE = plainnat LATEX_TIMESTAMP = NO LATEX_EMOJI_DIRECTORY = #--------------------------------------------------------------------------- # Configuration options related to the RTF output #--------------------------------------------------------------------------- GENERATE_RTF = NO RTF_OUTPUT = rtf COMPACT_RTF = NO RTF_HYPERLINKS = NO RTF_STYLESHEET_FILE = RTF_EXTENSIONS_FILE = #--------------------------------------------------------------------------- # Configuration options related to the man page output #--------------------------------------------------------------------------- GENERATE_MAN = NO MAN_OUTPUT = man MAN_EXTENSION = .3 MAN_SUBDIR = MAN_LINKS = NO #--------------------------------------------------------------------------- # Configuration options related to the XML output #--------------------------------------------------------------------------- GENERATE_XML = NO XML_OUTPUT = xml XML_PROGRAMLISTING = YES XML_NS_MEMB_FILE_SCOPE = NO #--------------------------------------------------------------------------- # Configuration options related to the DOCBOOK output #--------------------------------------------------------------------------- GENERATE_DOCBOOK = NO DOCBOOK_OUTPUT = docbook #--------------------------------------------------------------------------- # Configuration options for the AutoGen Definitions output #--------------------------------------------------------------------------- GENERATE_AUTOGEN_DEF = NO #--------------------------------------------------------------------------- # Configuration options related to the Perl module output #--------------------------------------------------------------------------- GENERATE_PERLMOD = NO PERLMOD_LATEX = NO PERLMOD_PRETTY = YES PERLMOD_MAKEVAR_PREFIX = #--------------------------------------------------------------------------- # Configuration options related to the preprocessor #--------------------------------------------------------------------------- ENABLE_PREPROCESSING = NO MACRO_EXPANSION = NO EXPAND_ONLY_PREDEF = NO SEARCH_INCLUDES = YES INCLUDE_PATH = INCLUDE_FILE_PATTERNS = PREDEFINED = CCPP \ MULTI_GASES \ 0 EXPAND_AS_DEFINED = SKIP_FUNCTION_MACROS = YES #--------------------------------------------------------------------------- # Configuration options related to external references #--------------------------------------------------------------------------- TAGFILES = GENERATE_TAGFILE = ALLEXTERNALS = NO EXTERNAL_GROUPS = YES EXTERNAL_PAGES = YES #--------------------------------------------------------------------------- # Configuration options related to the dot tool #--------------------------------------------------------------------------- DIA_PATH = HIDE_UNDOC_RELATIONS = YES HAVE_DOT = YES DOT_NUM_THREADS = 0 DOT_FONTNAME = Source Sans Pro DOT_FONTSIZE = DOT_FONTPATH = CLASS_GRAPH = YES COLLABORATION_GRAPH = YES GROUP_GRAPHS = YES UML_LOOK = YES UML_LIMIT_NUM_FIELDS = 10 DOT_UML_DETAILS = NO DOT_WRAP_THRESHOLD = 17 TEMPLATE_RELATIONS = NO INCLUDE_GRAPH = YES INCLUDED_BY_GRAPH = NO CALL_GRAPH = YES CALLER_GRAPH = YES GRAPHICAL_HIERARCHY = YES DIRECTORY_GRAPH = YES DIR_GRAPH_MAX_DEPTH = 1 DOT_IMAGE_FORMAT = SVG INTERACTIVE_SVG = NO DOT_PATH = DOTFILE_DIRS = MSCFILE_DIRS = DIAFILE_DIRS = PLANTUML_JAR_PATH = PLANTUML_CFG_FILE = PLANTUML_INCLUDE_PATH = DOT_GRAPH_MAX_NODES = 1000 MAX_DOT_GRAPH_DEPTH = 0 DOT_TRANSPARENT = YES DOT_MULTI_TARGETS = YES GENERATE_LEGEND = YES DOT_CLEANUP = YES