rm -rf INPUT RESTART
mkdir  INPUT RESTART

rsync -arv @[INPUTDATA_ROOT]/FV3_regional/INPUT/. INPUT/.

cp @[INPUTDATA_ROOT]/FV3_fix/CCN_ACTIVATE.BIN .

cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m01.nc aeroclim.m01.nc
cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m02.nc aeroclim.m02.nc
cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m03.nc aeroclim.m03.nc
cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m04.nc aeroclim.m04.nc
cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m05.nc aeroclim.m05.nc
cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m06.nc aeroclim.m06.nc
cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m07.nc aeroclim.m07.nc
cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m08.nc aeroclim.m08.nc
cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m09.nc aeroclim.m09.nc
cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m10.nc aeroclim.m10.nc
cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m12.nc aeroclim.m11.nc
cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m12.nc aeroclim.m12.nc

cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/aer_data/LUTS/optics_BC.v1_3.dat  optics_BC.dat
cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/aer_data/LUTS/optics_DU.v15_3.dat optics_DU.dat
cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/aer_data/LUTS/optics_OC.v1_3.dat  optics_OC.dat
cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/aer_data/LUTS/optics_SS.v3_3.dat  optics_SS.dat
cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/aer_data/LUTS/optics_SU.v1_3.dat  optics_SU.dat

if [ $WARM_START = .true. ]; then
    cp ../${DEP_RUN}${RT_SUFFIX}/RESTART/20220824.030000.coupler.res             INPUT/coupler.res
    cp ../${DEP_RUN}${RT_SUFFIX}/RESTART/20220824.030000.fv_core.res.nc          INPUT/fv_core.res.nc
    cp ../${DEP_RUN}${RT_SUFFIX}/RESTART/20220824.030000.fv_core.res.tile1.nc    INPUT/fv_core.res.tile1.nc
    cp ../${DEP_RUN}${RT_SUFFIX}/RESTART/20220824.030000.fv_srf_wnd.res.tile1.nc INPUT/fv_srf_wnd.res.tile1.nc
    cp ../${DEP_RUN}${RT_SUFFIX}/RESTART/20220824.030000.fv_tracer.res.tile1.nc  INPUT/fv_tracer.res.tile1.nc
    cp ../${DEP_RUN}${RT_SUFFIX}/RESTART/20220824.030000.phy_data.nc             INPUT/phy_data.nc
    cp ../${DEP_RUN}${RT_SUFFIX}/RESTART/20220824.030000.sfc_data.nc             INPUT/sfc_data.nc
fi
if [ $WRITE_RESTART_WITH_BCS = .true. ]; then
    cp @[INPUTDATA_ROOT]/FV3_regional/RESTART/fv_core.res.tile1_new.nc                           RESTART/fv_core.res.tile1_new.nc
    cp @[INPUTDATA_ROOT]/FV3_regional/RESTART/fv_tracer.res.tile1_new.nc                         RESTART/fv_tracer.res.tile1_new.nc
fi

if [[ $POSTAPP = 'lam' ]]; then
    cp ${PATHRT}/parm/post_itag_fv3lam itag
    cp ${PATHRT}/parm/postxconfig-NT-fv3lam.txt postxconfig-NT.txt
    cp ${PATHRT}/parm/postxconfig-NT-fv3lam.txt postxconfig-NT_FH00.txt
    cp ${PATHRT}/parm/params_grib2_tbl_new params_grib2_tbl_new
fi