rm -fr INPUT RESTART
mkdir INPUT RESTART
if [ $WARM_START = .F. ]; then
  cp -r @[RTPWD]/FV3_input_data_gsd/FV3_input_data_C96_with_aerosols/* INPUT/
else
  cp -r @[RTPWD]/FV3_input_data_gsd/FV3_input_data_C96_with_aerosols/grid_spec*.nc INPUT/
  cp -r @[RTPWD]/FV3_input_data_gsd/FV3_input_data_C96_with_aerosols/C96_grid*.nc INPUT/
  cp -r @[RTPWD]/FV3_input_data_gsd/FV3_input_data_C96_with_aerosols/oro_data*.nc INPUT/
  cp ../fv3_ccpp_gsd_coldstart${RT_SUFFIX}/RESTART/* INPUT/
fi

cp    @[RTPWD]/FV3_input_data/INPUT/aerosol.dat .
cp    @[RTPWD]/FV3_input_data/INPUT/co2historicaldata_201*.txt .
cp    @[RTPWD]/FV3_input_data/INPUT/sfc_emissivity_idx.txt .
cp    @[RTPWD]/FV3_input_data/INPUT/solarconstant_noaa_an.txt .
cp    @[RTPWD]/FV3_input_data/ozprdlos_2015_new_sbuvO3_tclm15_nuchem.f77 ./global_o3prdlos.f77
cp    @[RTPWD]/FV3_input_data/global_h2o_pltc.f77 ./global_h2oprdlos.f77
cp    @[RTPWD]/FV3_input_data/*grb .
cp    @[RTPWD]/FV3_input_data/*_table .

# Copy diag table file depending on LSM
if [ $LSM = 1 ]; then
  cp  @[RTPWD]/FV3_input_data_gsd/diag_table_gsd_noah diag_table
elif [ $LSM = 3 ]; then
  cp  @[RTPWD]/FV3_input_data_gsd/diag_table_gsd_ruc  diag_table
fi

# Copy field table, depending on microphysics choice and whether MYNN/SATMEDMF is used
if [ $IMP_PHYSICS = 8 ]; then
  if [ $DO_MYNNEDMF = .T. ] || [ $SATMEDMF = .T. ]; then
    cp  @[RTPWD]/FV3_input_data_gsd/field_table_gsd field_table
  else
    cp  @[RTPWD]/FV3_input_data_gsd/field_table_gf_thompson field_table
  fi
elif [ $IMP_PHYSICS = 11 ]; then
  if [ $DO_MYNNEDMF = .T. ] || [ $SATMEDMF = .T. ]; then
    cp @[RTPWD]/FV3_input_data_gsd/field_table_suite2 field_table
  else
    cp @[RTPWD]/FV3_input_data/field_table_gfdlmp field_table
  fi
else
  echo "ERROR, no field table configured for IMP_PHYSICS=${IMP_PHYSICS}"
  exit 1
fi
cp    @[RTPWD]/FV3_input_data/*configure .

# Thompson MP lookup tables - copy standard and SIONlib tables of precomputed tables
if [ $IMP_PHYSICS = 8 ]; then
  cp    @[RTPWD]/FV3_input_data_gsd/thompson_tables_precomp.sl .
  cp    @[RTPWD]/FV3_input_data_gsd/qr_acr_qs.dat .
  cp    @[RTPWD]/FV3_input_data_gsd/qr_acr_qg.dat .
  cp    @[RTPWD]/FV3_input_data_gsd/freezeH2O.dat .
  cp    @[RTPWD]/FV3_input_data_gsd/CCN_ACTIVATE.BIN .
fi

cp ${PATHRT}/../FV3/ccpp/suites/suite_${CCPP_SUITE}.xml suite_${CCPP_SUITE}.xml

# Add path to libccpp.so and libccpphys.so to LD_LIBRARY_PATH, append to module-setup.sh
echo " " >> module-setup.sh
echo "# Add path to libccpp.so and libccpphys.so to LD_LIBRARY_PATH"
echo "export LD_LIBRARY_PATH=${PATHRT}/../FV3/${CCPP_LIB_DIR}:${LD_LIBRARY_PATH:+:$LD_LIBRARY_PATH}" >> module-setup.sh
echo " " >> module-setup.sh