++ pwd + topdir=/lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc + echo /lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc /lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc + logs_dir=/lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/logs + '[' '!' -d /lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/logs ']' + echo 'Creating logs folder' Creating logs folder + mkdir /lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/logs + echo Global_workflow checkout ... Global_workflow checkout ... + [[ ! -d global-workflow.fd ]] + rm -f /lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/logs/checkout-global-workflow.log + git clone https://github.com/NOAA-EMC/global-workflow.git global-workflow.fd + cd global-workflow.fd + git checkout gefs_v12.3.13 Note: switching to 'gefs_v12.3.13'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at f9f0e54d Change GOA FV3-GSDCHEM-WW3 check out tag (#3398) + cd sorc + ./checkout.sh + '[' 0 -lt 1 ']' + FORCE_REPLACE=N + [[ N == \-\F ]] ++ pwd + topdir=/lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc + echo /lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc /lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc + LOG_DIR=/lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc/logs + '[' -d /lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc/logs -a N == Y ']' + mkdir -p /lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc/logs + ERRSCRIPT='eval [[ $err = 0 ]]' + err=0 + echo fv3gfs checkout ... fv3gfs checkout ... + [[ ! -d fv3gfs.fd ]] + rm -f /lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc/checkout-fv3gfs.log + git clone https://github.com/NOAA-EMC/FV3-GSDCHEM-WW3.git fv3gfs.fd + rc=0 + (( err+=0 )) + cd fv3gfs.fd + git checkout gefs_v12.3.13-0 Note: switching to 'gefs_v12.3.13-0'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 3393a66 Merge pull request #11 from NOAA-EMC/release/gefs_v12 + git submodule update --init --recursive Submodule 'FMS' (https://github.com/NOAA-EMC/FMS) registered for path 'FMS' Submodule 'FV3' (https://github.com/NOAA-EMC/fv3atm) registered for path 'FV3' Submodule 'GSDCHEM' (https://github.com/NOAA-EMC/GSDCHEM) registered for path 'GSDCHEM' Submodule 'NEMS' (https://github.com/NOAA-EMC/NEMS) registered for path 'NEMS' Submodule 'WW3' (https://github.com/NOAA-EMC/WW3) registered for path 'WW3' Cloning into '/lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc/fv3gfs.fd/FMS'... Cloning into '/lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc/fv3gfs.fd/FV3'... Cloning into '/lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc/fv3gfs.fd/GSDCHEM'... Cloning into '/lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc/fv3gfs.fd/NEMS'... Cloning into '/lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc/fv3gfs.fd/WW3'... From https://github.com/NOAA-EMC/FMS * branch d4937c8aeb927f0ff33fc59845da386502350d16 -> FETCH_HEAD Submodule path 'FMS': checked out 'd4937c8aeb927f0ff33fc59845da386502350d16' Submodule path 'FV3': checked out '8fc2515e72d4ab3a6f93a52214be1fb737dca406' Submodule 'atmos_cubed_sphere' (https://github.com/NOAA-EMC/GFDL_atmos_cubed_sphere) registered for path 'FV3/atmos_cubed_sphere' Cloning into '/lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc/fv3gfs.fd/FV3/atmos_cubed_sphere'... Submodule path 'FV3/atmos_cubed_sphere': checked out '97335f0d5c8092b19004690ea47c349c9d4e0bd6' Submodule path 'GSDCHEM': checked out '1b681c45bb6be2e7adb407c510a89bce6765907e' From https://github.com/NOAA-EMC/NEMS * branch f4aa38ca51a09fedf567b54fa01b571e1341ad25 -> FETCH_HEAD Submodule path 'NEMS': checked out 'f4aa38ca51a09fedf567b54fa01b571e1341ad25' Submodule 'tests/produtil/NCEPLIBS-pyprodutil' (https://github.com/NOAA-EMC/NCEPLIBS-pyprodutil) registered for path 'NEMS/tests/produtil/NCEPLIBS-pyprodutil' Cloning into '/lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc/fv3gfs.fd/NEMS/tests/produtil/NCEPLIBS-pyprodutil'... Submodule path 'NEMS/tests/produtil/NCEPLIBS-pyprodutil': checked out '1c96952b092e8dc4da03b741ae1e8453fc9fe099' Submodule path 'WW3': checked out '317c1e02456c9677096596cb00de14760b243aae' + rc=0 + (( err+=0 )) + cd /lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc + echo gsi checkout ... gsi checkout ... + [[ ! -d gsi.fd ]] + rm -f /lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc/logs/checkout-gsi.log + git clone https://github.com/NOAA-EMC/GSI.git gsi.fd + rc=0 + (( err+=0 )) + cd gsi.fd + git checkout gefs.v12.2.0 Note: switching to 'gefs.v12.2.0'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 082685926 Merge pull request #297 from XianwuXue-NOAA/hotfix/gefs_v12 + git submodule update --init --recursive Submodule 'fix' (gerrit:GSI-fix) registered for path 'fix' Submodule 'libsrc' (gerrit:GSI-libsrc) registered for path 'libsrc' Cloning into '/lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc/gsi.fd/fix'... Total 1475 (delta 755), reused 1474 (delta 755) Cloning into '/lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc/gsi.fd/libsrc'... Total 1711 (delta 744), reused 1711 (delta 744) Submodule path 'fix': checked out '928d56d8cd8b27aa21be401e053065b4debfeaf8' Submodule path 'libsrc': checked out 'e3cb6fcc3d881605b42df68f64a90fc443cda059' + cd /lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc + echo ufs_utils checkout ... ufs_utils checkout ... + [[ ! -d ufs_utils.fd ]] + rm -f /lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc/checkout-ufs_utils.log + git clone https://github.com/ufs-community/UFS_UTILS.git ufs_utils.fd + rc=0 + (( err+=0 )) + cd ufs_utils.fd + git checkout ops-gefsv12.2 Note: switching to 'ops-gefsv12.2'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 66f1b045 Port the ops_gefsv12.1 tag to WCOSS2 (#599) + git submodule update --init --recursive + cd /lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc + echo EMC_post checkout ... EMC_post checkout ... + [[ ! -d gfs_post.fd ]] + rm -f /lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc/checkout-gfs_post.log + git clone --recursive https://github.com/NOAA-EMC/UPP.git gfs_post.fd + rc=0 + (( err+=0 )) + cd gfs_post.fd + git checkout gefs_v12.3.0 Note: switching to 'gefs_v12.3.0'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 8c390887 fixed the UPP crash in Atmos (#525) + cd /lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc + echo GSD-prep-chem checkout ... GSD-prep-chem checkout ... + [[ ! -d gsd_prep_chem.fd ]] + rm -f /lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc/logs/checkout-gsd-prep-chem.log + git clone https://github.com/NOAA-GSL/GSL-prep-chem.git gsd_prep_chem.fd + rc=0 + (( err+=0 )) + cd gsd_prep_chem.fd + git checkout gefs_v12.3.12 Note: switching to 'gefs_v12.3.12'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 05742a2 Merge pull request #17 from EricSinsky-NOAA/fix_latency + cd /lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc/global-workflow.fd/sorc + [[ 0 -ne 0 ]] + eval '[[' '$err' = 0 ']]' ++ [[ 0 = 0 ]] + exit 0 + ERR=0 + '[' 0 = 0 ']' + msg='Checkout global-workflow normally' + cd /lfs/h1/nco/ptmp/carlos.m.diaz/gefs.v12.3.13/sorc + exit 0