#!/bin/ksh 
#####################################################################
#1/13/2015, Jiayi Peng and Dingchen Hou, created following JGEFS_POST_TRACK, for GFS tracks (up to 240hrs forecasts)
####################################################################
echo $(date) $0 $(date -u) begin

set -xa
export PS4='$SECONDS + '
date

export total_tasks=${total_tasks:-21}
export gefsmpexec=${gefsmpexec:-"mpirun -n $total_tasks"}
export APRUN=${gefsmpexec:-"mpirun -n $total_tasks"}
#export APRUNTRACK="aprun -j1 -n1 -N1 -d1"
#export NODES=1
#export IOBUF_PARAMS="*:size=32M:count=4:verbose"

####################################
# obtain unique process id (pid) and make temp directory
####################################
export pid=$$
export DATA=${DATA:-${DATAROOT}/${job}.${pid}}
mkdir -p $DATA
cd $DATA

############################
# Set up cycle varaible
############################
export cycle=t${cyc}z

echo cyc=$cyc
echo cycle=$cycle 

####################################
# Specify NET and RUN Name and model
####################################
export NET=${NET:-gefs}
export RUN=${RUN:-gefs}

####################################
# File To Log Msgs
####################################
export jlogfile=${jlogfile:-${DATA}/jlogfile.${job}.${pid}}

####################################
# Determine Job Output Name on System
####################################
export outid="LL$job"
export jobid="${outid}.o${pid}"
export pgmout="OUTPUT.${pid}"
export pgmerr=errfile

####################################
# SENDCOM  - Copy Files From TMPDIR to $COMOUT
# SENDDBN  - Issue DBNet Client Calls
# SENDECF  - Flag Events on ECF
# VERBOSE  - Specify Verbose Output
####################################
export SENDCOM=${SENDCOM:-YES}
export SENDDBN=${SENDDBN:-YES}
export SENDECF=${SENDECF:-YES}
export VERBOSE=${VERBOSE:-YES}

####################################
# Specify Execution Areas
####################################
export HOMEtrak=${HOMEtrak:-${NWROOT}/ens_tracker.${tracker_ver}}
export HOMEgefs=${HOMEgefs:-${NWROOT}/gefs.${gefs_ver}}

export EXECens_tracker=${EXECtrak:-$HOMEtrak/exec}
export USHens_tracker=${USHtrak:-$HOMEtrak/ush}
export FIXens_tracker=${FIXtrak:-$HOMEtrak/fix}
export SCRIPTSens_tracker=${SCRIPTSens_tracker:-$HOMEtrak/scripts}

export PARMgefs=$HOMEgefs/parm

##############################
# Run setup to initialize working directory and utility scripts
##############################
#ksh setup.sh

##############################
# Run setpdy and initialize PDY variables
##############################
setpdy.sh
. PDY
#export PDY=20160709

##############################################
# Define COM directories
##############################################
export COMINgfs=${COMINgfs:-$(compath.py gfs/prod)/gfs.${PDY}}
export COMINsyn=${COMINsyn:-$(compath.py arch/prod/syndat)}

export COMOUT=${COMOUT:-${COMROOT}/${NET}/${envir}/${RUN}.${PDY}/${cyc}/tctrack}
export COMOUThur=${COMOUThur:-${COMROOTp1}/hur/${envir}/global}
export COMOUTatcf=${COMOUTatcf:-${COMROOTp1}/nhc/${envir}/atcf}
mkdir -m 775 -p $COMOUT $COMOUThur $COMOUTatcf

##############################################
#echo set parameters using gefs.parm, if needed
##############################################
#. $PARMgefs/gefs.parm

export homesyndir=$HOMEtrak

echo
env | sort
echo

########################################################
# Execute the tracking script.
export cmodel=gfs
export loopnum=1
export ymdh=${PDY}${cyc}

export gfsdir=${COMINgfs}

export pert="p01"
pertdir=${DATA}/${cmodel}/${pert}
mkdir -p $pertdir

#-----------input data checking -----------------
${USHens_tracker}/data_check.sh
#------------------------------------------------

outfile=${pertdir}/trkr.${cmodel}.${pert}.${ymdh}.out
$APRUN ${USHens_tracker}/extrkr_g2.sh ${loopnum} ${cmodel} ${ymdh} ${pert} ${pertdir} 2>&1 >${outfile}
export err=$?; err_chk

#if [ ${SENDCOM} = 'NO' ]; then
#  cp ${pertdir}/trak.avnx.atcfunix.${PDY}${cyc} ${COMOUT}/avnx.t${cyc}z.cyclone.trackatcfunix
#fi

if [ "$SENDCOM" = 'YES' ]; then
  cp ${pertdir}/vitals.upd.avnx.${PDY}${cyc} ${COMOUT}/
  cp ${pertdir}/vitals.upd.avnx.${PDY}${cyc} ${COMOUT}/vitals.upd.gfsx.${PDY}${cyc}

  #cp ${pertdir}/trak.avnx.atcfunix.${PDY}${cyc} ${COMOUT}/trak.gfsx.atcfunix.${PDY}${cyc}
  #cat ${COMOUT}/trak.gfsx.atcfunix.${PDY}${cyc} | \
  cat ${pertdir}/trak.avnx.atcfunix.${PDY}${cyc} | \
      sed s:AVNX:GFSX:g \
    > ${COMOUT}/gfsx.t${cyc}z.cyclone.trackatcfunix
  #rm -f ${COMOUT}/trak.gfsx.atcfunix.${PDY}${cyc}
fi

cd $DATA
rm -rf ${DATA}/${cmodel}

${USHens_tracker}/atcf_2_cxml.sh ${cmodel} ${ymdh} ${COMOUT} ${DATA} 
export err=$?; err_chk

################################
msg="JOB COMPLETED NORMALLY"
postmsg "$jlogfile" "$msg"

##############################
# Remove the Temporary working directory
##############################
if [[ $KEEPDATA != "YES" ]]; then
	cd $DATAROOT
	rm -rf $DATA
fi

$(date) $0 $(date -u) end