#!/usr/bin/env bash
set -eua

ptmp=/gpfs/dell2/ptmp

EXPNAM=$1 CDATE=$2 COMROT=${3:-${COMROT:-$ptmp/$USER}} ARCDIR=${4:-${ARCDIR:-$COMROT/archive}} TMPDIR=${5:-${TMPDIR:-$ptmp/$USER/f2o/wrkdir.$$}}

FITDIR=$(cd $FITDIR; pwd); fitdir=$FITDIR/batrun

COMDAY=${COMDAY:-$COMROT}

WRKDIR=$TMPDIR; unset TMPDIR

set +x
echo -------------------------------------------------------------------------------------------------------------------
echo Starting the runfits for:
echo -------------------------------------------------------------------------------------------------------------------
echo "EXPNAM    " $EXPNAM       # argument 1 - experiment name    - required  
echo "CDATE     " $CDATE        # argument 2 - date of validation - required
echo "COMROT    " $COMROT       # argument 3 - COMROT directory   - optional - defaults to $ptmp/$USER  
echo "ARCDIR    " $ARCDIR       # argument 4 - ARCDIR directory   - optional - defaults to $COMROT/archive
echo "WRKDIR    " $WRKDIR       # argument 5 - WRKDIR directory   - optional - defaults to $ptmp/$USER/f2o/wrkdir.$$
echo "COMDAY    " $COMDAY       # inheirited - dayfile directory  - optional - defaults to $COMROT     
echo "FITDIR    " $FITDIR       # inheirited - Fit2obs batrun dir - optional - defaults to $(dirname $0)
echo "ACCOUNT   " $ACCOUNT      # inheirited - project code       - required - defaults to nothing
echo "COM_INA   " $COM_INA      # inheirited - project code       - required - defaults to nothing
echo "COM_INF   " $COM_INF      # inheirited - project code       - required - defaults to nothing
echo "RUN_ENVIR " $RUN_ENVIR    # inheirited - project code       - required - either nemsio or netcdf defaults to sigio
echo -------------------------------------------------------------------------------------------------------------------
set -x

mkdir -p $COMROT $COMDAY

cat<<eof | bsub
#BSUB -o $COMDAY/FITS.$EXPNAM.$CDATE.$$
#BSUB -J FITS.$EXPNAM.$CDATE
#BSUB -P $ACCOUNT
#BSUB -n 3
#BSUB -R span[ptile=3]
#BSUB -R affinity[core(1):distribute=balance]
#BSUB -W ${TIMELIM:-02:00}
#BSUB -q ${CUE2RUN:-dev}

#!/usr/bin/env bash
set -euax

set +x
module purge
module load EnvVars/1.0.3
module load lsf/10.1
module load ips/18.0.1.163
module load impi/18.0.1
module load NetCDF/4.5.0
module list
set -x

export OMP_NUM_THREADS=${FITOMP:-1}
export KMP_AFFINITY=disabled
export MPIRUN="mpirun -n 3"

export WRKDIR=$WRKDIR 
export ARCDIR=$ARCDIR
export fitdir=$fitdir
export COMOUT=$WRKDIR 

time $fitdir/runfits $EXPNAM $CDATE $COMROT

eof