This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdo configure 1.5.0, which was generated by GNU Autoconf 2.66. Invocation command line was $ ./configure --prefix=/nwprod/sorc/rtofs_cdo-1.4.0.1.fd --with-zlib=/usrx/local/lib --with-szlib=/nwprod/sorc/rtofs_cdo-1.4.0.1.fd --with-hdf5= --with-netcdf=/usrx/local/NetCDF/3.6.3 --with-proj=/nwprod/sorc/rtofs_cdo-1.4.0.1.fd --with-jasper=/nwprod/sorc/rtofs_cdo-1.4.0.1.fd --with-grib_api=/nwprod/sorc/rtofs_cdo-1.4.0.1.fd --enable-grib --enable-cgribex --disable-shared SCC=icc CXX=icc ## --------- ## ## Platform. ## ## --------- ## hostname = t14a2 uname -m = x86_64 uname -r = 2.6.32-220.el6.x86_64 uname -s = Linux uname -v = #1 SMP Wed Nov 9 08:03:13 EST 2011 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usrx/local/NetCDF/3.6.3/bin PATH: . PATH: /usrx/local/hpss PATH: /usrx/local/lsf/8.3/linux2.6-glibc2.3-x86_64/etc PATH: /usrx/local/lsf/8.3/linux2.6-glibc2.3-x86_64/bin PATH: /usrx/local/intel/icsxe/2012.0.032/bin PATH: /usrx/local/intel/vtune_amplifier_xe_2011/bin64 PATH: /usrx/local/intel/inspector_xe_2011/bin64 PATH: /usrx/local/intel/itac/8.0.3.007/bin PATH: /usrx/local/intel/impi/4.0.3.008/intel64/bin PATH: /usrx/local/intel/composer_xe_2011_sp1.11.339/bin/intel64 PATH: /usr/lib64/qt-3.3/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin PATH: /usr/local/sbin PATH: /usr/sbin PATH: /sbin PATH: /opt/ibutils/bin PATH: /usrx/local/intel/composer_xe_2011_sp1.11.339/mpirt/bin/intel64 PATH: /u/Steven.Earle/bin PATH: /nwprod/ecflow PATH: /usrx/local/ncar401/bin PATH: /usrx/local/imajik/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2488: checking build system type configure:2502: result: x86_64-unknown-linux-gnu configure:2522: checking host system type configure:2535: result: x86_64-unknown-linux-gnu configure:2573: checking for a BSD-compatible install configure:2641: result: /usr/bin/install -c configure:2652: checking whether build environment is sane configure:2702: result: yes configure:2843: checking for a thread-safe mkdir -p configure:2882: result: /bin/mkdir -p configure:2895: checking for gawk configure:2911: found /bin/gawk configure:2922: result: gawk configure:2933: checking whether make sets $(MAKE) configure:2955: result: yes configure:3038: checking whether to enable maintainer-specific portions of Makefiles configure:3047: result: no configure:3062: setting up libtool configure:3110: checking how to print strings configure:3137: result: printf configure:3170: checking for style of include used by make configure:3198: result: GNU configure:3268: checking for gcc configure:3284: found /usr/bin/gcc configure:3295: result: gcc configure:3524: checking for C compiler version configure:3533: gcc --version >&5 gcc (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3544: $? = 0 configure:3533: gcc -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.6 20110731 (Red Hat 4.4.6-3) (GCC) configure:3544: $? = 0 configure:3533: gcc -V >&5 gcc: '-V' option must have argument configure:3544: $? = 1 configure:3533: gcc -qversion >&5 gcc: unrecognized option '-qversion' gcc: no input files configure:3544: $? = 1 configure:3564: checking whether the C compiler works configure:3586: gcc conftest.c >&5 configure:3590: $? = 0 configure:3638: result: yes configure:3641: checking for C compiler default output file name configure:3643: result: a.out configure:3649: checking for suffix of executables configure:3656: gcc -o conftest conftest.c >&5 configure:3660: $? = 0 configure:3682: result: configure:3704: checking whether we are cross compiling configure:3712: gcc -o conftest conftest.c >&5 configure:3716: $? = 0 configure:3723: ./conftest configure:3727: $? = 0 configure:3742: result: no configure:3747: checking for suffix of object files configure:3769: gcc -c conftest.c >&5 configure:3773: $? = 0 configure:3794: result: o configure:3798: checking whether we are using the GNU C compiler configure:3817: gcc -c conftest.c >&5 configure:3817: $? = 0 configure:3826: result: yes configure:3835: checking whether gcc accepts -g configure:3855: gcc -c -g conftest.c >&5 configure:3855: $? = 0 configure:3896: result: yes configure:3913: checking for gcc option to accept ISO C89 configure:3977: gcc -c -g -O2 conftest.c >&5 configure:3977: $? = 0 configure:3990: result: none needed configure:4012: checking dependency style of gcc configure:4122: result: gcc3 configure:4137: checking for a sed that does not truncate output configure:4201: result: /bin/sed configure:4219: checking for grep that handles long lines and -e configure:4277: result: /bin/grep configure:4282: checking for egrep configure:4344: result: /bin/grep -E configure:4349: checking for fgrep configure:4411: result: /bin/grep -F configure:4446: checking for ld used by gcc configure:4513: result: /usr/bin/ld configure:4520: checking if the linker (/usr/bin/ld) is GNU ld configure:4535: result: yes configure:4547: checking for BSD- or MS-compatible name lister (nm) configure:4596: result: /usr/bin/nm -B configure:4726: checking the name lister (/usr/bin/nm -B) interface configure:4733: gcc -c -g -O2 conftest.c >&5 configure:4736: /usr/bin/nm -B "conftest.o" configure:4739: output 0000000000000000 B some_variable configure:4746: result: BSD nm configure:4749: checking whether ln -s works configure:4753: result: yes configure:4761: checking the maximum length of command line arguments configure:4886: result: 3458764513820540925 configure:4903: checking whether the shell understands some XSI constructs configure:4913: result: yes configure:4917: checking whether the shell understands "+=" configure:4923: result: yes configure:4958: checking for /usr/bin/ld option to reload object files configure:4965: result: -r configure:5034: checking for objdump configure:5050: found /usr/bin/objdump configure:5061: result: objdump configure:5093: checking how to recognize dependent libraries configure:5295: result: pass_all configure:5355: checking for ar configure:5371: found /usr/bin/ar configure:5382: result: ar configure:5460: checking for strip configure:5476: found /usr/bin/strip configure:5487: result: strip configure:5559: checking for ranlib configure:5575: found /usr/bin/ranlib configure:5586: result: ranlib configure:5688: checking command to parse /usr/bin/nm -B output from gcc object configure:5806: gcc -c -g -O2 conftest.c >&5 configure:5809: $? = 0 configure:5813: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm configure:5816: $? = 0 configure:5870: gcc -o conftest -g -O2 conftest.c conftstm.o >&5 configure:5873: $? = 0 configure:5911: result: ok configure:6007: gcc -c -g -O2 conftest.c >&5 configure:6010: $? = 0 configure:6752: checking how to run the C preprocessor configure:6783: gcc -E conftest.c configure:6783: $? = 0 configure:6797: gcc -E conftest.c conftest.c:11:28: error: ac_nonexistent.h: No such file or directory configure:6797: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.0" | #define PACKAGE_STRING "cdo 1.5.0" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.0" | /* end confdefs.h. */ | #include configure:6822: result: gcc -E configure:6842: gcc -E conftest.c configure:6842: $? = 0 configure:6856: gcc -E conftest.c conftest.c:11:28: error: ac_nonexistent.h: No such file or directory configure:6856: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.0" | #define PACKAGE_STRING "cdo 1.5.0" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.0" | /* end confdefs.h. */ | #include configure:6885: checking for ANSI C header files configure:6905: gcc -c -g -O2 conftest.c >&5 configure:6905: $? = 0 configure:6978: gcc -o conftest -g -O2 conftest.c >&5 configure:6978: $? = 0 configure:6978: ./conftest configure:6978: $? = 0 configure:6989: result: yes configure:7002: checking for sys/types.h configure:7002: gcc -c -g -O2 conftest.c >&5 configure:7002: $? = 0 configure:7002: result: yes configure:7002: checking for sys/stat.h configure:7002: gcc -c -g -O2 conftest.c >&5 configure:7002: $? = 0 configure:7002: result: yes configure:7002: checking for stdlib.h configure:7002: gcc -c -g -O2 conftest.c >&5 configure:7002: $? = 0 configure:7002: result: yes configure:7002: checking for string.h configure:7002: gcc -c -g -O2 conftest.c >&5 configure:7002: $? = 0 configure:7002: result: yes configure:7002: checking for memory.h configure:7002: gcc -c -g -O2 conftest.c >&5 configure:7002: $? = 0 configure:7002: result: yes configure:7002: checking for strings.h configure:7002: gcc -c -g -O2 conftest.c >&5 configure:7002: $? = 0 configure:7002: result: yes configure:7002: checking for inttypes.h configure:7002: gcc -c -g -O2 conftest.c >&5 configure:7002: $? = 0 configure:7002: result: yes configure:7002: checking for stdint.h configure:7002: gcc -c -g -O2 conftest.c >&5 configure:7002: $? = 0 configure:7002: result: yes configure:7002: checking for unistd.h configure:7002: gcc -c -g -O2 conftest.c >&5 configure:7002: $? = 0 configure:7002: result: yes configure:7016: checking for dlfcn.h configure:7016: gcc -c -g -O2 conftest.c >&5 configure:7016: $? = 0 configure:7016: result: yes configure:7203: checking for objdir configure:7218: result: .libs configure:7489: checking if gcc supports -fno-rtti -fno-exceptions configure:7507: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C configure:7511: $? = 0 configure:7524: result: no configure:7544: checking for gcc option to produce PIC configure:7829: result: -fPIC -DPIC configure:7841: checking if gcc PIC flag -fPIC -DPIC works configure:7859: gcc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5 configure:7863: $? = 0 configure:7876: result: yes configure:7900: checking if gcc static flag -static works configure:7928: result: no configure:7943: checking if gcc supports -c -o file.o configure:7964: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5 configure:7968: $? = 0 configure:7990: result: yes configure:7998: checking if gcc supports -c -o file.o configure:8045: result: yes configure:8078: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:9153: result: yes configure:9398: checking dynamic linker characteristics configure:9853: gcc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5 configure:9853: $? = 0 configure:10075: result: GNU/Linux ld.so configure:10182: checking how to hardcode library paths into programs configure:10207: result: immediate configure:10747: checking whether stripping libraries is possible configure:10752: result: yes configure:10787: checking if libtool supports shared libraries configure:10789: result: yes configure:10792: checking whether to build shared libraries configure:10813: result: no configure:10816: checking whether to build static libraries configure:10820: result: yes configure:10899: checking for gcc configure:10926: result: gcc configure:10948: checking for gcc option to accept ISO C99 configure:11097: gcc -c -g -O2 conftest.c >&5 conftest.c:73: error: expected ';', ',' or ')' before 'text' conftest.c: In function 'main': conftest.c:127: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar' conftest.c:127: error: 'newvar' undeclared (first use in this function) conftest.c:127: error: (Each undeclared identifier is reported only once conftest.c:127: error: for each function it appears in.) conftest.c:137: error: 'for' loop initial declarations are only allowed in C99 mode conftest.c:137: note: use option -std=c99 or -std=gnu99 to compile your code configure:11097: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.0" | #define PACKAGE_STRING "cdo 1.5.0" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include | #include | #include | #include | #include | | // Check varargs macros. These examples are taken from C99 6.10.3.5. | #define debug(...) fprintf (stderr, __VA_ARGS__) | #define showlist(...) puts (#__VA_ARGS__) | #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__)) | static void | test_varargs_macros (void) | { | int x = 1234; | int y = 5678; | debug ("Flag"); | debug ("X = %d\n", x); | showlist (The first, second, and third items.); | report (x>y, "x is %d but y is %d", x, y); | } | | // Check long long types. | #define BIG64 18446744073709551615ull | #define BIG32 4294967295ul | #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0) | #if !BIG_OK | your preprocessor is broken; | #endif | #if BIG_OK | #else | your preprocessor is broken; | #endif | static long long int bignum = -9223372036854775807LL; | static unsigned long long int ubignum = BIG64; | | struct incomplete_array | { | int datasize; | double data[]; | }; | | struct named_init { | int number; | const wchar_t *name; | double average; | }; | | typedef const char *ccp; | | static inline int | test_restrict (ccp restrict text) | { | // See if C++-style comments work. | // Iterate through items via the restricted pointer. | // Also check for declarations in for loops. | for (unsigned int i = 0; *(text+i) != '\0'; ++i) | continue; | return 0; | } | | // Check varargs and va_copy. | static void | test_varargs (const char *format, ...) | { | va_list args; | va_start (args, format); | va_list args_copy; | va_copy (args_copy, args); | | const char *str; | int number; | float fnumber; | | while (*format) | { | switch (*format++) | { | case 's': // string | str = va_arg (args_copy, const char *); | break; | case 'd': // int | number = va_arg (args_copy, int); | break; | case 'f': // float | fnumber = va_arg (args_copy, double); | break; | default: | break; | } | } | va_end (args_copy); | va_end (args); | } | | int | main () | { | | // Check bool. | _Bool success = false; | | // Check restrict. | if (test_restrict ("String literal") == 0) | success = true; | char *restrict newvar = "Another string"; | | // Check varargs. | test_varargs ("s, d' f .", "string", 65, 34.234); | test_varargs_macros (); | | // Check flexible array members. | struct incomplete_array *ia = | malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10)); | ia->datasize = 10; | for (int i = 0; i < ia->datasize; ++i) | ia->data[i] = i * 1.234; | | // Check named initializers. | struct named_init ni = { | .number = 34, | .name = L"Test wide string", | .average = 543.34343, | }; | | ni.number = 58; | | int dynamic_array[ni.number]; | dynamic_array[ni.number - 1] = 543; | | // work around unused variable warnings | return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x' | || dynamic_array[ni.number - 1] != 543); | | ; | return 0; | } configure:11097: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:11097: $? = 0 configure:11117: result: -std=gnu99 configure:11126: checking whether gcc -std=gnu99 and cc understand -c and -o together configure:11157: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5 configure:11161: $? = 0 configure:11167: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5 configure:11171: $? = 0 configure:11182: cc -c conftest.c >&5 configure:11186: $? = 0 configure:11194: cc -c conftest.c -o conftest2.o >&5 configure:11198: $? = 0 configure:11204: cc -c conftest.c -o conftest2.o >&5 configure:11208: $? = 0 configure:11226: result: yes configure:11295: checking for ar configure:11322: result: ar configure:11479: checking for ld configure:11506: result: /usr/bin/ld -m elf_x86_64 configure:11571: checking for nm configure:11598: result: /usr/bin/nm -B configure:11663: checking for ar configure:11690: result: ar configure:11755: checking for as configure:11771: found /usr/bin/as configure:11782: result: as configure:11847: checking for dlltool configure:11877: result: no configure:11939: checking for objdump configure:11966: result: objdump configure:12031: checking for strip configure:12058: result: strip configure:12123: checking for ranlib configure:12150: result: ranlib configure:12285: checking for C++ compiler version configure:12294: icc --version >&5 icc (ICC) 12.1.5 20120612 Copyright (C) 1985-2012 Intel Corporation. All rights reserved. configure:12305: $? = 0 configure:12294: icc -v >&5 icc version 12.1.5 (gcc version 4.4.6 compatibility) configure:12305: $? = 0 configure:12294: icc -V >&5 Intel(R) C Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 12.1.5.339 Build 20120612 Copyright (C) 1985-2012 Intel Corporation. All rights reserved. configure:12305: $? = 0 configure:12294: icc -qversion >&5 icc: command line warning #10006: ignoring unknown option '-qversion' icc: command line error: no files specified; for help type "icc -help" configure:12305: $? = 1 configure:12309: checking whether we are using the GNU C++ compiler configure:12328: icc -c conftest.cpp >&5 configure:12328: $? = 0 configure:12337: result: yes configure:12346: checking whether icc accepts -g configure:12366: icc -c -g conftest.cpp >&5 configure:12366: $? = 0 configure:12407: result: yes configure:12432: checking dependency style of icc configure:12542: result: gcc3 configure:12565: checking how to run the C++ preprocessor configure:12592: icc -E conftest.cpp configure:12592: $? = 0 configure:12606: icc -E conftest.cpp conftest.cpp(23): error #2379: cannot open source file "ac_nonexistent.h" #include ^ configure:12606: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.0" | #define PACKAGE_STRING "cdo 1.5.0" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:12631: result: icc -E configure:12651: icc -E conftest.cpp configure:12651: $? = 0 configure:12665: icc -E conftest.cpp conftest.cpp(23): error #2379: cannot open source file "ac_nonexistent.h" #include ^ configure:12665: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.0" | #define PACKAGE_STRING "cdo 1.5.0" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:12833: checking for ld used by icc configure:12900: result: /usr/bin/ld -m elf_x86_64 configure:12907: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:12922: result: yes configure:12977: checking whether the icc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:13909: result: yes configure:13937: icc -c -g -O2 conftest.cpp >&5 configure:13940: $? = 0 configure:14122: checking for icc option to produce PIC configure:14444: result: -fPIC -DPIC configure:14453: checking if icc PIC flag -fPIC -DPIC works configure:14471: icc -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5 configure:14475: $? = 0 configure:14488: result: yes configure:14509: checking if icc static flag -static works configure:14537: result: no configure:14549: checking if icc supports -c -o file.o configure:14570: icc -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:14574: $? = 0 configure:14596: result: yes configure:14601: checking if icc supports -c -o file.o configure:14648: result: yes configure:14678: checking whether the icc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:14706: result: yes configure:14849: checking dynamic linker characteristics configure:15460: result: GNU/Linux ld.so configure:15513: checking how to hardcode library paths into programs configure:15538: result: immediate configure:15586: checking for special C compiler options needed for large files configure:15631: result: no configure:15637: checking for _FILE_OFFSET_BITS value needed for large files configure:15662: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:15662: $? = 0 configure:15694: result: no configure:15785: checking for stdlib.h configure:15785: result: yes configure:15785: checking for unistd.h configure:15785: result: yes configure:15785: checking for sys/param.h configure:15785: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:15785: $? = 0 configure:15785: result: yes configure:15805: checking for getpagesize configure:15805: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:15805: $? = 0 configure:15805: result: yes configure:15814: checking for working mmap configure:15961: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:15961: $? = 0 configure:15961: ./conftest configure:15961: $? = 0 configure:15971: result: yes configure:15982: checking for malloc in -lmalloc configure:16007: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lmalloc >&5 conftest.c:35: warning: conflicting types for built-in function 'malloc' /usr/bin/ld: cannot find -lmalloc collect2: ld returned 1 exit status configure:16007: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.0" | #define PACKAGE_STRING "cdo 1.5.0" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char malloc (); | int | main () | { | return malloc (); | ; | return 0; | } configure:16016: result: no configure:16029: checking for struct stat.st_blksize configure:16029: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16029: $? = 0 configure:16029: result: yes configure:16043: checking sys/resource.h usability configure:16043: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16043: $? = 0 configure:16043: result: yes configure:16043: checking sys/resource.h presence configure:16043: gcc -E conftest.c configure:16043: $? = 0 configure:16043: result: yes configure:16043: checking for sys/resource.h configure:16043: result: yes configure:16055: checking sys/times.h usability configure:16055: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16055: $? = 0 configure:16055: result: yes configure:16055: checking sys/times.h presence configure:16055: gcc -E conftest.c configure:16055: $? = 0 configure:16055: result: yes configure:16055: checking for sys/times.h configure:16055: result: yes configure:16067: checking malloc.h usability configure:16067: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16067: $? = 0 configure:16067: result: yes configure:16067: checking malloc.h presence configure:16067: gcc -E conftest.c configure:16067: $? = 0 configure:16067: result: yes configure:16067: checking for malloc.h configure:16067: result: yes configure:16081: checking for mallinfo configure:16081: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:16081: $? = 0 configure:16081: result: yes configure:16094: checking for isnan configure:16094: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 conftest.c:56: warning: conflicting types for built-in function 'isnan' configure:16094: $? = 0 configure:16094: result: yes configure:16105: checking for getrlimit configure:16105: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:16105: $? = 0 configure:16105: result: yes configure:16116: checking for gethostname configure:16116: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:16116: $? = 0 configure:16116: result: yes configure:16190: checking for floor in -lm configure:16215: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lm >&5 conftest.c:48: warning: conflicting types for built-in function 'floor' configure:16215: $? = 0 configure:16224: result: yes configure:16426: checking for the pthreads library -lpthreads configure:16464: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lpthreads -lm >&5 /usr/bin/ld: cannot find -lpthreads collect2: ld returned 1 exit status configure:16464: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.0" | #define PACKAGE_STRING "cdo 1.5.0" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMPILER "gcc -std=gnu99 -g -O2" | #define COMP_VERSION "gcc (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3)" | #define USER_NAME "Steven.Earle" | #define HOST_NAME "t14a2" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | static void routine(void* a) {a=0;} | static void* start_routine(void* a) {return a;} | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th,0,start_routine,0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0); | ; | return 0; | } configure:16473: result: no configure:16371: checking whether pthreads work without any flags configure:16464: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lm >&5 /tmpnwprd/ccpceust.o: In function `main': /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/conftest.c:49: undefined reference to `pthread_create' /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/conftest.c:50: undefined reference to `pthread_join' /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/conftest.c:52: undefined reference to `__pthread_register_cancel' /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/conftest.c:53: undefined reference to `__pthread_unregister_cancel' collect2: ld returned 1 exit status configure:16464: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.0" | #define PACKAGE_STRING "cdo 1.5.0" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMPILER "gcc -std=gnu99 -g -O2" | #define COMP_VERSION "gcc (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3)" | #define USER_NAME "Steven.Earle" | #define HOST_NAME "t14a2" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | static void routine(void* a) {a=0;} | static void* start_routine(void* a) {return a;} | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th,0,start_routine,0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0); | ; | return 0; | } configure:16473: result: no configure:16376: checking whether pthreads work with -Kthread configure:16464: gcc -std=gnu99 -o conftest -g -O2 -Kthread conftest.c -lm >&5 gcc: unrecognized option '-Kthread' /tmpnwprd/ccPbWsCz.o: In function `main': /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/conftest.c:49: undefined reference to `pthread_create' /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/conftest.c:50: undefined reference to `pthread_join' /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/conftest.c:52: undefined reference to `__pthread_register_cancel' /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/conftest.c:53: undefined reference to `__pthread_unregister_cancel' collect2: ld returned 1 exit status configure:16464: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.0" | #define PACKAGE_STRING "cdo 1.5.0" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMPILER "gcc -std=gnu99 -g -O2" | #define COMP_VERSION "gcc (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3)" | #define USER_NAME "Steven.Earle" | #define HOST_NAME "t14a2" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | static void routine(void* a) {a=0;} | static void* start_routine(void* a) {return a;} | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th,0,start_routine,0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0); | ; | return 0; | } configure:16473: result: no configure:16376: checking whether pthreads work with -kthread configure:16464: gcc -std=gnu99 -o conftest -g -O2 -kthread conftest.c -lm >&5 gcc: unrecognized option '-kthread' /tmpnwprd/ccFGw4VD.o: In function `main': /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/conftest.c:49: undefined reference to `pthread_create' /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/conftest.c:50: undefined reference to `pthread_join' /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/conftest.c:52: undefined reference to `__pthread_register_cancel' /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/conftest.c:53: undefined reference to `__pthread_unregister_cancel' collect2: ld returned 1 exit status configure:16464: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.0" | #define PACKAGE_STRING "cdo 1.5.0" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMPILER "gcc -std=gnu99 -g -O2" | #define COMP_VERSION "gcc (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3)" | #define USER_NAME "Steven.Earle" | #define HOST_NAME "t14a2" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | static void routine(void* a) {a=0;} | static void* start_routine(void* a) {return a;} | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th,0,start_routine,0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0); | ; | return 0; | } configure:16473: result: no configure:16426: checking for the pthreads library -llthread configure:16464: gcc -std=gnu99 -o conftest -g -O2 conftest.c -llthread -lm >&5 /usr/bin/ld: cannot find -llthread collect2: ld returned 1 exit status configure:16464: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.0" | #define PACKAGE_STRING "cdo 1.5.0" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMPILER "gcc -std=gnu99 -g -O2" | #define COMP_VERSION "gcc (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3)" | #define USER_NAME "Steven.Earle" | #define HOST_NAME "t14a2" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | static void routine(void* a) {a=0;} | static void* start_routine(void* a) {return a;} | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th,0,start_routine,0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0); | ; | return 0; | } configure:16473: result: no configure:16376: checking whether pthreads work with -pthread configure:16464: gcc -std=gnu99 -o conftest -g -O2 -pthread conftest.c -lm >&5 configure:16464: $? = 0 configure:16473: result: yes configure:16492: checking for joinable pthread attribute configure:16507: gcc -std=gnu99 -o conftest -g -O2 -pthread conftest.c -lm >&5 configure:16507: $? = 0 configure:16513: result: PTHREAD_CREATE_JOINABLE configure:16523: checking if more special flags are required for pthreads configure:16530: result: no configure:16777: checking zlib.h usability configure:16777: gcc -std=gnu99 -c -g -O2 -pthread -I/usrx/local/lib/include conftest.c >&5 configure:16777: $? = 0 configure:16777: result: yes configure:16777: checking zlib.h presence configure:16777: gcc -E -I/usrx/local/lib/include conftest.c configure:16777: $? = 0 configure:16777: result: yes configure:16777: checking for zlib.h configure:16777: result: yes configure:16787: checking for library containing deflate configure:16818: gcc -std=gnu99 -o conftest -g -O2 -pthread -I/usrx/local/lib/include -L/usrx/local/lib/lib conftest.c -lm >&5 /tmpnwprd/cc0Op8wM.o: In function `main': /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/conftest.c:55: undefined reference to `deflate' collect2: ld returned 1 exit status configure:16818: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.0" | #define PACKAGE_STRING "cdo 1.5.0" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMPILER "gcc -std=gnu99 -g -O2" | #define COMP_VERSION "gcc (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3)" | #define USER_NAME "Steven.Earle" | #define HOST_NAME "t14a2" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char deflate (); | int | main () | { | return deflate (); | ; | return 0; | } configure:16818: gcc -std=gnu99 -o conftest -g -O2 -pthread -I/usrx/local/lib/include -L/usrx/local/lib/lib conftest.c -lz -lm >&5 configure:16818: $? = 0 configure:16835: result: -lz configure:17022: checking szlib.h usability configure:17022: gcc -std=gnu99 -c -g -O2 -pthread -I/nwprod/sorc/rtofs_cdo-1.4.0.1.fd/include -I/usrx/local/lib/include conftest.c >&5 configure:17022: $? = 0 configure:17022: result: yes configure:17022: checking szlib.h presence configure:17022: gcc -E -I/nwprod/sorc/rtofs_cdo-1.4.0.1.fd/include -I/usrx/local/lib/include conftest.c configure:17022: $? = 0 configure:17022: result: yes configure:17022: checking for szlib.h configure:17022: result: yes configure:17032: checking for library containing SZ_BufftoBuffCompress configure:17063: gcc -std=gnu99 -o conftest -g -O2 -pthread -I/nwprod/sorc/rtofs_cdo-1.4.0.1.fd/include -I/usrx/local/lib/include -L/nwprod/sorc/rtofs_cdo-1.4.0.1.fd/lib -L/usrx/local/lib/lib conftest.c -lz -lm >&5 /tmpnwprd/ccOL5gH0.o: In function `main': /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/conftest.c:57: undefined reference to `SZ_BufftoBuffCompress' collect2: ld returned 1 exit status configure:17063: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.0" | #define PACKAGE_STRING "cdo 1.5.0" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMPILER "gcc -std=gnu99 -g -O2" | #define COMP_VERSION "gcc (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3)" | #define USER_NAME "Steven.Earle" | #define HOST_NAME "t14a2" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char SZ_BufftoBuffCompress (); | int | main () | { | return SZ_BufftoBuffCompress (); | ; | return 0; | } configure:17063: gcc -std=gnu99 -o conftest -g -O2 -pthread -I/nwprod/sorc/rtofs_cdo-1.4.0.1.fd/include -I/usrx/local/lib/include -L/nwprod/sorc/rtofs_cdo-1.4.0.1.fd/lib -L/usrx/local/lib/lib conftest.c -lsz -lz -lm >&5 configure:17063: $? = 0 configure:17080: result: -lsz configure:17416: is not a directory! HDF5 suppressed configure:17524: checking netcdf.h usability configure:17524: gcc -std=gnu99 -c -g -O2 -pthread -I/usrx/local/NetCDF/3.6.3/include -I/nwprod/sorc/rtofs_cdo-1.4.0.1.fd/include -I/usrx/local/lib/include conftest.c >&5 configure:17524: $? = 0 configure:17524: result: yes configure:17524: checking netcdf.h presence configure:17524: gcc -E -I/usrx/local/NetCDF/3.6.3/include -I/nwprod/sorc/rtofs_cdo-1.4.0.1.fd/include -I/usrx/local/lib/include conftest.c configure:17524: $? = 0 configure:17524: result: yes configure:17524: checking for netcdf.h configure:17524: result: yes configure:17534: checking for library containing nc_open configure:17565: gcc -std=gnu99 -o conftest -g -O2 -pthread -I/usrx/local/NetCDF/3.6.3/include -I/nwprod/sorc/rtofs_cdo-1.4.0.1.fd/include -I/usrx/local/lib/include -L/usrx/local/NetCDF/3.6.3/lib -L/nwprod/sorc/rtofs_cdo-1.4.0.1.fd/lib -L/usrx/local/lib/lib conftest.c -lsz -lz -lm >&5 /tmpnwprd/ccYpTvjf.o: In function `main': /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/conftest.c:59: undefined reference to `nc_open' collect2: ld returned 1 exit status configure:17565: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.0" | #define PACKAGE_STRING "cdo 1.5.0" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMPILER "gcc -std=gnu99 -g -O2" | #define COMP_VERSION "gcc (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3)" | #define USER_NAME "Steven.Earle" | #define HOST_NAME "t14a2" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_open (); | int | main () | { | return nc_open (); | ; | return 0; | } configure:17565: gcc -std=gnu99 -o conftest -g -O2 -pthread -I/usrx/local/NetCDF/3.6.3/include -I/nwprod/sorc/rtofs_cdo-1.4.0.1.fd/include -I/usrx/local/lib/include -L/usrx/local/NetCDF/3.6.3/lib -L/nwprod/sorc/rtofs_cdo-1.4.0.1.fd/lib -L/usrx/local/lib/lib conftest.c -lnetcdf -lsz -lz -lm >&5 /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(v1hpg.o): In function `v1h_put_NC_attrarray': v1hpg.c:(.text+0x14ea): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(v1hpg.o): In function `v1h_get_NC_attrarray': v1hpg.c:(.text+0x3811): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(var.o): In function `new_x_NC_var': var.c:(.text+0x7b): undefined reference to `_intel_fast_memset' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(var.o): In function `dup_NC_vararrayV': var.c:(.text+0x290): undefined reference to `_intel_fast_memset' var.c:(.text+0x327): undefined reference to `__intel_sse4_strlen' var.c:(.text+0x3a6): undefined reference to `_intel_fast_memset' var.c:(.text+0x3f8): undefined reference to `__intel_ssse3_rep_memcpy' var.c:(.text+0x518): undefined reference to `__intel_ssse3_rep_memcpy' var.c:(.text+0x52d): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(var.o): In function `NC_findvar': var.c:(.text+0x622): undefined reference to `__intel_sse4_strlen' var.c:(.text+0x668): undefined reference to `__intel_sse4_strlen' var.c:(.text+0x67e): undefined reference to `__intel_sse4_strncmp' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(var.o): In function `nc_def_var': var.c:(.text+0xab3): undefined reference to `__intel_sse4_strlen' var.c:(.text+0xb04): undefined reference to `__intel_sse4_strlen' var.c:(.text+0xb1a): undefined reference to `__intel_sse4_strncmp' var.c:(.text+0xb7a): undefined reference to `__intel_sse4_strlen' var.c:(.text+0xbf8): undefined reference to `_intel_fast_memset' var.c:(.text+0xc4a): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(var.o): In function `nc_inq_varid': var.c:(.text+0x100e): undefined reference to `__intel_sse4_strlen' var.c:(.text+0x1057): undefined reference to `__intel_sse4_strlen' var.c:(.text+0x106d): undefined reference to `__intel_sse4_strncmp' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(var.o): In function `nc_inq_var': var.c:(.text+0x115f): undefined reference to `__intel_sse4_strncpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(var.o): In function `nc_inq_varname': var.c:(.text+0x126d): undefined reference to `__intel_sse4_strncpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(var.o): In function `nc_rename_var': var.c:(.text+0x151d): undefined reference to `__intel_sse4_strlen' var.c:(.text+0x1565): undefined reference to `__intel_sse4_strlen' var.c:(.text+0x157b): undefined reference to `__intel_sse4_strncmp' var.c:(.text+0x1622): undefined reference to `__intel_sse4_strlen' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(posixio.o): In function `ncio_px_get': posixio.c:(.text+0x1ab): undefined reference to `_intel_fast_memset' posixio.c:(.text+0x2fd): undefined reference to `__intel_ssse3_rep_memcpy' posixio.c:(.text+0x3c9): undefined reference to `_intel_fast_memset' posixio.c:(.text+0x4a1): undefined reference to `__intel_ssse3_rep_memcpy' posixio.c:(.text+0x550): undefined reference to `_intel_fast_memset' posixio.c:(.text+0x727): undefined reference to `_intel_fast_memset' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(posixio.o): In function `ncio_px_move': posixio.c:(.text+0x9cc): undefined reference to `__intel_ssse3_rep_memcpy' posixio.c:(.text+0xa94): undefined reference to `__intel_ssse3_rep_memcpy' posixio.c:(.text+0xba9): undefined reference to `__intel_ssse3_rep_memcpy' posixio.c:(.text+0xc33): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(posixio.o): In function `px_get': posixio.c:(.text+0xd9f): undefined reference to `_intel_fast_memset' posixio.c:(.text+0xefa): undefined reference to `__intel_ssse3_rep_memcpy' posixio.c:(.text+0xfcd): undefined reference to `_intel_fast_memset' posixio.c:(.text+0x10a0): undefined reference to `__intel_ssse3_rep_memcpy' posixio.c:(.text+0x115a): undefined reference to `_intel_fast_memset' posixio.c:(.text+0x1344): undefined reference to `_intel_fast_memset' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(posixio.o): In function `ncio_spx_get': posixio.c:(.text+0x1777): undefined reference to `_intel_fast_memset' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(posixio.o): In function `ncio_spx_move': posixio.c:(.text+0x18ee): undefined reference to `_intel_fast_memset' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(posixio.o): In function `ncio_create': posixio.c:(.text+0x1a9a): undefined reference to `__intel_sse4_strlen' posixio.c:(.text+0x1b17): undefined reference to `__intel_sse4_strcpy' posixio.c:(.text+0x1cbd): undefined reference to `_intel_fast_memset' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(posixio.o): In function `ncio_open': posixio.c:(.text+0x1ebb): undefined reference to `__intel_sse4_strlen' posixio.c:(.text+0x1f38): undefined reference to `__intel_sse4_strcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `dup_NC_attrarrayV': attr.c:(.text+0x290): undefined reference to `_intel_fast_memset' attr.c:(.text+0x31c): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x3bf): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `NC_findattr': attr.c:(.text+0x556): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x59c): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x5b2): undefined reference to `__intel_sse4_strncmp' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_inq_attname': attr.c:(.text+0x69f): undefined reference to `__intel_sse4_strncpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_inq_attid': attr.c:(.text+0x7af): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x7f6): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x80c): undefined reference to `__intel_sse4_strncmp' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_inq_atttype': attr.c:(.text+0x928): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x96d): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x983): undefined reference to `__intel_sse4_strncmp' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_inq_attlen': attr.c:(.text+0xa98): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0xadd): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0xaf3): undefined reference to `__intel_sse4_strncmp' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_inq_att': attr.c:(.text+0xc0f): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0xc54): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0xc6a): undefined reference to `__intel_sse4_strncmp' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_rename_att': attr.c:(.text+0xdcf): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0xe19): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0xe2f): undefined reference to `__intel_sse4_strncmp' attr.c:(.text+0xebe): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0xf04): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0xf1a): undefined reference to `__intel_sse4_strncmp' attr.c:(.text+0xf84): undefined reference to `__intel_sse4_strlen' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_copy_att': attr.c:(.text+0x1117): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x115b): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x1171): undefined reference to `__intel_sse4_strncmp' attr.c:(.text+0x1277): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x12bd): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x12d3): undefined reference to `__intel_sse4_strncmp' attr.c:(.text+0x1380): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x1450): undefined reference to `__intel_ssse3_rep_memcpy' attr.c:(.text+0x1575): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_del_att': attr.c:(.text+0x16db): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x170f): undefined reference to `__intel_sse4_strncmp' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_put_att_text': attr.c:(.text+0x18de): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x1929): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x193f): undefined reference to `__intel_sse4_strncmp' attr.c:(.text+0x19e8): undefined reference to `__intel_sse4_strlen' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_get_att_text': attr.c:(.text+0x1d0c): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x1d51): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x1d67): undefined reference to `__intel_sse4_strncmp' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_put_att_schar': attr.c:(.text+0x1f35): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x1f93): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x1fa9): undefined reference to `__intel_sse4_strncmp' attr.c:(.text+0x20a3): undefined reference to `__intel_sse4_strlen' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_get_att_schar': attr.c:(.text+0x260c): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x2651): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x2667): undefined reference to `__intel_sse4_strncmp' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_put_att_uchar': attr.c:(.text+0x2895): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x28f3): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x2909): undefined reference to `__intel_sse4_strncmp' attr.c:(.text+0x2a03): undefined reference to `__intel_sse4_strlen' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_get_att_uchar': attr.c:(.text+0x2f6c): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x2fb1): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x2fc7): undefined reference to `__intel_sse4_strncmp' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_put_att_short': attr.c:(.text+0x31f5): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x3253): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x3269): undefined reference to `__intel_sse4_strncmp' attr.c:(.text+0x3363): undefined reference to `__intel_sse4_strlen' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_get_att_short': attr.c:(.text+0x38cc): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x3911): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x3927): undefined reference to `__intel_sse4_strncmp' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_put_att_int': attr.c:(.text+0x3b55): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x3bb3): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x3bc9): undefined reference to `__intel_sse4_strncmp' attr.c:(.text+0x3cc3): undefined reference to `__intel_sse4_strlen' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_get_att_int': attr.c:(.text+0x422c): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x4271): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x4287): undefined reference to `__intel_sse4_strncmp' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_put_att_long': attr.c:(.text+0x44b5): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x4513): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x4529): undefined reference to `__intel_sse4_strncmp' attr.c:(.text+0x4623): undefined reference to `__intel_sse4_strlen' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_get_att_long': attr.c:(.text+0x4b8c): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x4bd1): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x4be7): undefined reference to `__intel_sse4_strncmp' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_put_att_float': attr.c:(.text+0x4e15): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x4e73): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x4e89): undefined reference to `__intel_sse4_strncmp' attr.c:(.text+0x4f83): undefined reference to `__intel_sse4_strlen' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_get_att_float': attr.c:(.text+0x54ec): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x5531): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x5547): undefined reference to `__intel_sse4_strncmp' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_put_att_double': attr.c:(.text+0x5775): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x57d3): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x57e9): undefined reference to `__intel_sse4_strncmp' attr.c:(.text+0x58e3): undefined reference to `__intel_sse4_strlen' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(attr.o): In function `nc_get_att_double': attr.c:(.text+0x5e4c): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x5e91): undefined reference to `__intel_sse4_strlen' attr.c:(.text+0x5ea7): undefined reference to `__intel_sse4_strncmp' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(ncx.o): In function `ncx_getn_schar_schar': ncx.c:(.text+0x1025): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(ncx.o): In function `ncx_getn_schar_uchar': ncx.c:(.text+0x1055): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(ncx.o): In function `ncx_pad_getn_schar_schar': ncx.c:(.text+0x184d): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(ncx.o): In function `ncx_pad_getn_schar_uchar': ncx.c:(.text+0x188d): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(ncx.o): In function `ncx_putn_schar_schar': ncx.c:(.text+0x2135): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(ncx.o):ncx.c:(.text+0x2165): more undefined references to `__intel_ssse3_rep_memcpy' follow /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `fill_NC_var': putget.c:(.text+0x44f): undefined reference to `_intel_fast_memset' putget.c:(.text+0x4a1): undefined reference to `_intel_fast_memset' putget.c:(.text+0x56b): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x5c0): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x785): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `nc_put_var1_uchar': putget.c:(.text+0xd84): undefined reference to `_intel_fast_memset' putget.c:(.text+0xdc9): undefined reference to `_intel_fast_memset' putget.c:(.text+0xe9f): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0xeeb): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x2010): undefined reference to `_intel_fast_memset' putget.c:(.text+0x204c): undefined reference to `_intel_fast_memset' putget.c:(.text+0x2119): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x216e): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x2303): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x243f): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `nc_put_var1_long': putget.c:(.text+0x2ad4): undefined reference to `_intel_fast_memset' putget.c:(.text+0x2b19): undefined reference to `_intel_fast_memset' putget.c:(.text+0x2bef): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x2c3b): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x3d74): undefined reference to `_intel_fast_memset' putget.c:(.text+0x3db0): undefined reference to `_intel_fast_memset' putget.c:(.text+0x3e7d): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x3ed2): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x4067): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x41a3): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `nc_put_var_text': putget.c:(.text+0xa61b): undefined reference to `_intel_fast_memset' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `nc_put_var_uchar': putget.c:(.text+0xb582): undefined reference to `_intel_fast_memset' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `nc_put_var_schar': putget.c:(.text+0xce52): undefined reference to `_intel_fast_memset' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `nc_put_var_short': putget.c:(.text+0xe513): undefined reference to `_intel_fast_memset' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `nc_put_var_int': putget.c:(.text+0xfc53): undefined reference to `_intel_fast_memset' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o):putget.c:(.text+0x11393): more undefined references to `_intel_fast_memset' follow /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `nc_get_vara_uchar': putget.c:(.text+0x312bf): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `nc_get_vara_long': putget.c:(.text+0x34148): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `nc_put_vara_uchar': putget.c:(.text+0x370bc): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `NCvnrecs': putget.c:(.text+0x38bfd): undefined reference to `_intel_fast_memset' putget.c:(.text+0x38c3e): undefined reference to `_intel_fast_memset' putget.c:(.text+0x38d15): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x38d64): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x39254): undefined reference to `_intel_fast_memset' putget.c:(.text+0x39294): undefined reference to `_intel_fast_memset' putget.c:(.text+0x39369): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x393be): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x395b3): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x397c2): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `nc_put_vara_long': putget.c:(.text+0x3b324): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o):putget.c:(.text+0x3cadf): more undefined references to `__intel_ssse3_rep_memcpy' follow /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `nc_copy_var': putget.c:(.text+0x3cc1c): undefined reference to `_intel_fast_memset' putget.c:(.text+0x3d249): undefined reference to `_intel_fast_memset' putget.c:(.text+0x3d29d): undefined reference to `_intel_fast_memset' putget.c:(.text+0x3d389): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x3d3ce): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x3d941): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x3ddde): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x3e2f3): undefined reference to `_intel_fast_memset' putget.c:(.text+0x3e331): undefined reference to `_intel_fast_memset' putget.c:(.text+0x3e410): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x3e46c): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x3e694): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x3e8b0): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `nc_put_var1_double': putget.c:(.text+0x41724): undefined reference to `_intel_fast_memset' putget.c:(.text+0x41769): undefined reference to `_intel_fast_memset' putget.c:(.text+0x4183f): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x4188b): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x429c4): undefined reference to `_intel_fast_memset' putget.c:(.text+0x42a00): undefined reference to `_intel_fast_memset' putget.c:(.text+0x42acd): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x42b22): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x42cb7): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x42df3): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `nc_put_var1_float': putget.c:(.text+0x43484): undefined reference to `_intel_fast_memset' putget.c:(.text+0x434c9): undefined reference to `_intel_fast_memset' putget.c:(.text+0x4359f): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x435eb): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x44724): undefined reference to `_intel_fast_memset' putget.c:(.text+0x44760): undefined reference to `_intel_fast_memset' putget.c:(.text+0x4482d): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x44882): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x44a17): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x44b53): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `nc_put_var1_int': putget.c:(.text+0x451e4): undefined reference to `_intel_fast_memset' putget.c:(.text+0x45229): undefined reference to `_intel_fast_memset' putget.c:(.text+0x452ff): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x4534b): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x46484): undefined reference to `_intel_fast_memset' putget.c:(.text+0x464c0): undefined reference to `_intel_fast_memset' putget.c:(.text+0x4658d): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x465e2): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x46777): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x468b3): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `nc_put_var1_short': putget.c:(.text+0x46f44): undefined reference to `_intel_fast_memset' putget.c:(.text+0x46f89): undefined reference to `_intel_fast_memset' putget.c:(.text+0x4705f): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x470ab): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x481e4): undefined reference to `_intel_fast_memset' putget.c:(.text+0x48220): undefined reference to `_intel_fast_memset' putget.c:(.text+0x482ed): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x48342): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x484d7): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x48613): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `nc_put_var1_text': putget.c:(.text+0x48c97): undefined reference to `_intel_fast_memset' putget.c:(.text+0x48ce4): undefined reference to `_intel_fast_memset' putget.c:(.text+0x48dbf): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x48e0b): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x49533): undefined reference to `_intel_fast_memset' putget.c:(.text+0x4956f): undefined reference to `_intel_fast_memset' putget.c:(.text+0x4963c): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x49691): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x49826): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x49962): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `nc_put_var1_schar': putget.c:(.text+0x49fa4): undefined reference to `_intel_fast_memset' putget.c:(.text+0x49fe9): undefined reference to `_intel_fast_memset' putget.c:(.text+0x4a0bf): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x4a10b): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x4b230): undefined reference to `_intel_fast_memset' putget.c:(.text+0x4b26c): undefined reference to `_intel_fast_memset' putget.c:(.text+0x4b339): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x4b38e): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x4b523): undefined reference to `__intel_ssse3_rep_memcpy' putget.c:(.text+0x4b65f): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o): In function `nc_get_vara_text': putget.c:(.text+0x4ca13): undefined reference to `__intel_ssse3_rep_memcpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(putget.o):putget.c:(.text+0x4ed0f): more undefined references to `__intel_ssse3_rep_memcpy' follow /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(dim.o): In function `dup_NC_dimarrayV': dim.c:(.text+0x25d): undefined reference to `_intel_fast_memset' dim.c:(.text+0x2db): undefined reference to `__intel_sse4_strlen' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(dim.o): In function `nc_def_dim': dim.c:(.text+0x54e): undefined reference to `__intel_sse4_strlen' dim.c:(.text+0x590): undefined reference to `__intel_sse4_strlen' dim.c:(.text+0x5a6): undefined reference to `__intel_sse4_strncmp' dim.c:(.text+0x61a): undefined reference to `__intel_sse4_strlen' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(dim.o): In function `nc_inq_dimid': dim.c:(.text+0x7e1): undefined reference to `__intel_sse4_strlen' dim.c:(.text+0x823): undefined reference to `__intel_sse4_strlen' dim.c:(.text+0x839): undefined reference to `__intel_sse4_strncmp' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(dim.o): In function `nc_inq_dim': dim.c:(.text+0x915): undefined reference to `__intel_sse4_strncpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(dim.o): In function `nc_inq_dimname': dim.c:(.text+0x9e3): undefined reference to `__intel_sse4_strncpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(dim.o): In function `nc_rename_dim': dim.c:(.text+0xb39): undefined reference to `__intel_sse4_strlen' dim.c:(.text+0xb7a): undefined reference to `__intel_sse4_strlen' dim.c:(.text+0xb90): undefined reference to `__intel_sse4_strncmp' dim.c:(.text+0xc3c): undefined reference to `__intel_sse4_strlen' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(string.o): In function `NC_check_name': string.c:(.text+0x152): undefined reference to `__intel_sse4_strchr' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(string.o): In function `new_NC_string': string.c:(.text+0x3e0): undefined reference to `_intel_fast_memset' string.c:(.text+0x42b): undefined reference to `__intel_sse4_strncpy' /usrx/local/NetCDF/3.6.3/lib/libnetcdf.a(string.o): In function `set_NC_string': string.c:(.text+0x49f): undefined reference to `__intel_sse4_strlen' string.c:(.text+0x4c2): undefined reference to `__intel_ssse3_rep_memcpy' string.c:(.text+0x4d9): undefined reference to `_intel_fast_memset' collect2: ld returned 1 exit status configure:17565: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.0" | #define PACKAGE_STRING "cdo 1.5.0" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.0" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMPILER "gcc -std=gnu99 -g -O2" | #define COMP_VERSION "gcc (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3)" | #define USER_NAME "Steven.Earle" | #define HOST_NAME "t14a2" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_open (); | int | main () | { | return nc_open (); | ; | return 0; | } configure:17582: result: no configure:17591: error: Could not link to netcdf library ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set=set ac_cv_env_CXX_value=icc ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_gethostname=yes ac_cv_func_getpagesize=yes ac_cv_func_getrlimit=yes ac_cv_func_isnan=yes ac_cv_func_mallinfo=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_header_dlfcn_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_szlib_h=yes ac_cv_header_unistd_h=yes ac_cv_header_zlib_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_lib_m_floor=yes ac_cv_lib_malloc_malloc=no ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_SED=/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='icc -E' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_AS=as ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64' ac_cv_prog_ac_ct_NM='/usr/bin/nm -B' ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_c99=-std=gnu99 ac_cv_prog_cc_g=yes ac_cv_prog_cc_gcc_c_o=yes ac_cv_prog_cxx_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_SZ_BufftoBuffCompress=-lsz ac_cv_search_deflate=-lz ac_cv_search_nc_open=no ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/nm -B' lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_shlibpath_overrides_runpath=no lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=3458764513820540925 ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/config/missing --run aclocal-1.11' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/config/missing --run tar' AR='ar' AS='as' AUTOCONF='${SHELL} /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/config/missing --run autoconf' AUTOHEADER='${SHELL} /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/config/missing --run autoheader' AUTOMAKE='${SHELL} /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/config/missing --run automake-1.11' AWK='gawk' CC='gcc -std=gnu99' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2 -pthread' CLDFLAGS='' CLIBS='' CPP='gcc -E' CPPFLAGS='-I/usrx/local/NetCDF/3.6.3/include -I/nwprod/sorc/rtofs_cdo-1.4.0.1.fd/include -I/usrx/local/lib/include ' CXX='icc' CXXCPP='icc -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2' CYGPATH_W='echo' DEFS='' DEPDIR='.deps' DLLTOOL=':' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='' ENABLE_CDI_LIB='' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='' ENABLE_CGRIBEX='' ENABLE_EXTRA='' ENABLE_GRIB='' ENABLE_IEG='' ENABLE_SERVICE='' EXEEXT='' FCFLAGS='' FGREP='/bin/grep -F' GREP='/bin/grep' GRIB_API_INCLUDE='' GRIB_API_LDFLAGS='' HDF5_INCLUDE='' HDF5_LDFLAGS='' HOST_NAME='t14a2' INCLUDES='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' JASPER_LDFLAGS='' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS='-L/usrx/local/NetCDF/3.6.3/lib -L/nwprod/sorc/rtofs_cdo-1.4.0.1.fd/lib -L/usrx/local/lib/lib ' LIBOBJS='' LIBS='-lsz -lz -lm ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/config/missing --run makeinfo' MKDIR_P='/bin/mkdir -p' NETCDF_INCLUDE='-I/usrx/local/NetCDF/3.6.3/include' NETCDF_LDFLAGS='-L/usrx/local/NetCDF/3.6.3/lib -lnetcdf' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OTOOL64='' OTOOL='' PACKAGE='cdo' PACKAGE_BUGREPORT='http://code.zmaw.de/projects/cdo' PACKAGE_NAME='cdo' PACKAGE_STRING='cdo 1.5.0' PACKAGE_TARNAME='cdo' PACKAGE_URL='' PACKAGE_VERSION='1.5.0' PATH_SEPARATOR=':' PROJ_INCLUDE='' PROJ_LDFLAGS='' PTHREAD_CC='gcc -std=gnu99' PTHREAD_CFLAGS='-pthread' PTHREAD_LIBS='' RANLIB='ranlib' SED='/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' SYSTEM_TYPE='x86_64-unknown-linux-gnu' SZLIB_INCLUDE=' -I/nwprod/sorc/rtofs_cdo-1.4.0.1.fd/include' SZLIB_LDFLAGS=' -L/nwprod/sorc/rtofs_cdo-1.4.0.1.fd/lib -lsz' THREADS_INCLUDE='' THREADS_LDFLAGS='' USER_NAME='Steven.Earle' VERSION='1.5.0' ZLIB_INCLUDE=' -I/usrx/local/lib/include' ZLIB_LDFLAGS=' -L/usrx/local/lib/lib -lz' ac_ct_CC='gcc' ac_ct_CXX='' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' ax_pthread_config='' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /nwprod/sorc/rtofs_cdo-1.4.0.1.fd/cdo-1.5.0/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='/bin/mkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/nwprod/sorc/rtofs_cdo-1.4.0.1.fd' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs='' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "cdo" #define PACKAGE_TARNAME "cdo" #define PACKAGE_VERSION "1.5.0" #define PACKAGE_STRING "cdo 1.5.0" #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" #define PACKAGE_URL "" #define PACKAGE "cdo" #define VERSION "1.5.0" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_TIMES_H 1 #define HAVE_MALLOC_H 1 #define HAVE_MALLINFO 1 #define HAVE_ISNAN 1 #define HAVE_GETRLIMIT 1 #define HAVE_GETHOSTNAME 1 #define COMPILER "gcc -std=gnu99 -g -O2" #define COMP_VERSION "gcc (GCC) 4.4.6 20110731 (Red Hat 4.4.6-3)" #define USER_NAME "Steven.Earle" #define HOST_NAME "t14a2" #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" #define HAVE_LIBM 1 #define HAVE_LIBPTHREAD 1 #define HAVE_ZLIB_H 1 #define HAVE_LIBZ 1 #define HAVE_SZLIB_H 1 #define HAVE_LIBSZ 1 #define HAVE_NETCDF_H 1 configure: exit 1